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Report for CCDS30040.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30040.1 Public Mus musculus X Chst7 23 108 98 CCDS HistoryNCBI Gene:60322Re-query CCDS DB by CCDS ID:30040.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30040.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044138.7 ENSMUSP00000043222.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044138.7Link to Ensembl Protein Viewer:ENSMUSP00000043222.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000044138Re-query CCDS DB by Protein ID:ENSMUSP00000043222
Original member Current member NCBI NM_021715.1 NP_068361.1 Accepted alive Link to Nucleotide Sequence:NM_021715.1Link to Protein Sequence:NP_068361.1Re-query CCDS DB by Nucleotide ID:NM_021715Re-query CCDS DB by Protein ID:NP_068361Link to BLAST:NP_068361.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_068361.1 484 Q9EP78 484 100% 0 0

Chromosomal Locations for CCDS 30040.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 20059716 20061170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1455 nt):
ATGAAGGGCCGGCGGCGGCGGCGCCGAGAGTATTGCAAGTTCACGCTGCTCTTGGCGCTGTACACGCTTT
TGCTACTTCTTGTCCCCTCTGTACTGGACAGCCACAGCGAGCAGGACAAGGGCAGGAACTGCCCCGGCCT
GCAGCGCAGCTTGGGTGTGTGGAGCCTGGAGGCGGCGGCGGCCGGGGAACGTGAGCAGGGCGCTGAGGTG
CGGTCCCTGGCCGAAGGAAACCCGGATCGATCCCCCGGGTCCCCCGGCAACCTCAGCGCCGTCGGTGAGG
CGGTGACCCAGGAAAAGCAACACATCTATGTGCATGCCACCTGGCGCACCGGCTCGTCCTTCTTGGGCGA
ACTCTTCAACCAGCACCCGGACGTTTTCTACTTGTACGAGCCCATGTGGCATCTGTGGCAGGCACTGTAT
CCGGGCGACGCGGAGAGCCTGCAGGGCGCACTAAGAGACATGCTGCGCTCCCTCTTCCGCTGTGATTTCT
CTGTGCTGCGCCTGTACGCGCAGCCTGGGGACCCTGGGGAGCGAGCACCGGACTCGGCCAACCTCACCAC
GGCCATGCTTTTCCGCTGGCGGACCAACAAGGTCATCTGCTCGCCGCCTCTGTGCCCCGCCGCGCCCCGG
GCACGCGCGGACGTGGGACTCGTCGAGGACAAAGCCTGCGAAAGTACCTGCCCGCCCGTTTCGCTCCGCG
CCCTGGAGGCCGAGTGCCGCAAGTACCCGGTGGTGGTCATCAAAGACGTGCGGCTACTGGACCTGGGAGT
GCTGGTCCCTCTGCTGCGTGACCCAGGCCTCAACCTAAAGGTGGTGCAACTCTTCCGAGACCCTCGGGCC
GTGCACAACTCGCGCCTCAAGTCGAGGCAGGGACTGCTGCGCGAAAGCATCCAGGTGCTGCGCACGCGCC
AGAGGGGCGACCACTTCCACCGGGTGCTGCTGGCGCATGGAGTGGATGCCCGTCCGGGAGGCCAGGCCCG
GGCTCTGCCCTCGGCGCCACGCGCTGATTTCTTCTTAACCAGCGCGCTTGAGGTGATCTGTGAAGCGTGG
CTTCGCGACCTGCTATTCACCCGCGGCGCGCCCGCCTGGCTGAGGCGTCGCTACCTGCGGCTGCGTTATG
AGGACCTGGTGTGGCAGCCCCAAGCCCAGCTGCGCCGCCTGCTGCGCTTCTCTGGGTTGCGGACACTCGC
CGCGCTTGATGCCTTCGCATTCAATATGACGCGGGGCTCGGCCTACGGCGCCGATCGTCCCTTCCACTTG
TCTGCGCGGGACGCCCGAGAGGCTGTGCACGCCTGGCGCGAACGTCTGAGCCAAGAGCAGGTGCGCCAAG
TGGAAACCGCCTGCGCCCCTGCCATGCGTCTGCTTGCCTACCCTCGAAGTGGGGACGAACGCGACAGGAA
GACCGTCAGGGAAGGGGAGACACCACTGGAGACCAAGGCCAATTGGGCTGTGTAA

Translation (484 aa):
MKGRRRRRREYCKFTLLLALYTLLLLLVPSVLDSHSEQDKGRNCPGLQRSLGVWSLEAAAAGEREQGAEV
RSLAEGNPDRSPGSPGNLSAVGEAVTQEKQHIYVHATWRTGSSFLGELFNQHPDVFYLYEPMWHLWQALY
PGDAESLQGALRDMLRSLFRCDFSVLRLYAQPGDPGERAPDSANLTTAMLFRWRTNKVICSPPLCPAAPR
ARADVGLVEDKACESTCPPVSLRALEAECRKYPVVVIKDVRLLDLGVLVPLLRDPGLNLKVVQLFRDPRA
VHNSRLKSRQGLLRESIQVLRTRQRGDHFHRVLLAHGVDARPGGQARALPSAPRADFFLTSALEVICEAW
LRDLLFTRGAPAWLRRRYLRLRYEDLVWQPQAQLRRLLRFSGLRTLAALDAFAFNMTRGSAYGADRPFHL
SARDAREAVHAWRERLSQEQVRQVETACAPAMRLLAYPRSGDERDRKTVREGETPLETKANWAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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