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Report for CCDS29228.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29228.1 Public Mus musculus 18 Myot 23 108 98 CCDS HistoryNCBI Gene:58916Re-query CCDS DB by CCDS ID:29228.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29228.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025349.11 ENSMUSP00000025349.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025349.11Link to Ensembl Protein Viewer:ENSMUSP00000025349.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000025349Re-query CCDS DB by Protein ID:ENSMUSP00000025349
Original member Current member EBI ENSMUST00000115498.1 ENSMUSP00000111160.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115498.1Link to Ensembl Protein Viewer:ENSMUSP00000111160.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115498Re-query CCDS DB by Protein ID:ENSMUSP00000111160
Original member Current member NCBI NM_001033621.4 NP_001028793.1 Accepted alive Link to Nucleotide Sequence:NM_001033621.4Link to Protein Sequence:NP_001028793.1Re-query CCDS DB by Nucleotide ID:NM_001033621Re-query CCDS DB by Protein ID:NP_001028793Link to BLAST:NP_001028793.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028793.1 496 Q9JIF9 496 100% 0 0

Chromosomal Locations for CCDS 29228.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 44336958 44337310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44341303 44341477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44342342 44342443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44344442 44344488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44345012 44345144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44346008 44346215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44354116 44354281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44354802 44354935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44355108 44355280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1491 nt):
ATGTTTAACTACGAACGTCCAAAACACTTCATCCAGCCGCAAAATCCGTGTGGCTCCAGACTGCAGCCTC
CAGGACCGGAAGTCTCCGGCTTCCCGAGCCAGACCAAACAGTCTTCCATCGTCATACAGCCTCGCCAGTG
CACAGAGCAGAGATTTTCTGCCTCCTCCACAGTGAGCTCTCACATCACCGTGTCTTCCTCTGCTTATCCT
GCTCCCCAGCAGCTTGCTGGCCCCAACCCCGGCCAAAAGGTTACTGCTACCTATAACCAGTCCCCAGCCA
GCTTCCTCAGTTCTATATTACCGTCTCAACCCGATTACTGTAACAGTAAAATCCCATCCACTGTGGACTC
CAACTATCAACAATCCTCAGTTAACCAACCTGTAAATGCCATGTCATCCCAAGCTGCAAATGCTAGGCCC
ACTCCAAAGACTCCTGACCATGAGATCCAAGGATCGAAAGAAGCGTTGATTCAAGATTTGGAAAGAAAGC
TGAAATGCAAAGACACCCTTCTTCATAATGGAAATCAAAGACTGACCTACGAGGAGAAGATGGCTCGCAG
GTTGTTAGGACCGCAGAATGCTGCTGCTGTGTTTCAGGCGCAAAACAGTGATGTCCAAGATTCACCACAG
CATAACCCAGAGCAAGCACGGCTGCACGTTCCCACATCACAAGTAAGAAGTAGATCGTCCTCCAGAGCAG
AGGCCAATGATCAGGATGCCATCCAGGAGAAGTTTTACCCACCACGCTTCATTCAAGTGCCAGAAAACAT
GTCGATCGAAGAGGGGAGGTTCTGCCGAATGGACTTTAAAGTAAGTGGACTGCCAGCCCCTGATGTGTCA
TGGTATCTAAACGGGAGACCAGTGCAATCAGATGAGTTGCACAAAATGATAGTGTCTGAGAAGGGTTTCC
ACTCCCTCATCTTCGAAGTGGTCAGAGCATCAGATGCAGGGCCATATGCATGCGTGGCCAGGAACAGAGC
TGGAGAAGCCACCTTCACAGTGCAGCTGGATGTTCTGGCAAAAGAGCATAAAAGAGCACCGATGTTTATC
TTCAAACCACAGAGTAAGAAAGTTTTTGAGGGAGAGACCGTGAAGCTGGAGTGCCAGATCTCAGCTATCC
CTCCACCAAAGCTGTTCTGGAAAAGAAACAATGAAATGGTCCAGTTCAACACTGATCGGATAAGCTTATA
TCATGACAACGCCGGAAGAGTAACTTTACTGATAAAAGATGTAAACAAGAAGGACGCTGGGTGGTATACA
GTGTCAGCAGTCAATGAAGCTGGTGTGACCACGTGTAACACACGATTAGATGTCACAGCCCGTCCAATCC
AAACTCTCCCAGCTCCTAAGCAGCTGCGTGTTCGACCAACATTCAGCAAATATTTAGCGCTCAATGGGAG
AGGTTTGGATGTGAAACAAGCTTTTAACCCTGAAGGAGAATTTCAGCGCCTGGCAGCTCAATCCGGACTC
TACGAAAGTGAAGAACTTTAA

Translation (496 aa):
MFNYERPKHFIQPQNPCGSRLQPPGPEVSGFPSQTKQSSIVIQPRQCTEQRFSASSTVSSHITVSSSAYP
APQQLAGPNPGQKVTATYNQSPASFLSSILPSQPDYCNSKIPSTVDSNYQQSSVNQPVNAMSSQAANARP
TPKTPDHEIQGSKEALIQDLERKLKCKDTLLHNGNQRLTYEEKMARRLLGPQNAAAVFQAQNSDVQDSPQ
HNPEQARLHVPTSQVRSRSSSRAEANDQDAIQEKFYPPRFIQVPENMSIEEGRFCRMDFKVSGLPAPDVS
WYLNGRPVQSDELHKMIVSEKGFHSLIFEVVRASDAGPYACVARNRAGEATFTVQLDVLAKEHKRAPMFI
FKPQSKKVFEGETVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYHDNAGRVTLLIKDVNKKDAGWYT
VSAVNEAGVTTCNTRLDVTARPIQTLPAPKQLRVRPTFSKYLALNGRGLDVKQAFNPEGEFQRLAAQSGL
YESEEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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