NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS23193.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23193.1 Public Mus musculus 9 Dnaja4 23 108 98 CCDS HistoryNCBI Gene:58233Re-query CCDS DB by CCDS ID:23193.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23193.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070070.7 ENSMUSP00000070413.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070070.7Link to Ensembl Protein Viewer:ENSMUSP00000070413.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000070070Re-query CCDS DB by Protein ID:ENSMUSP00000070413
Original member Current member EBI ENSMUST00000120452.7 ENSMUSP00000112520.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120452.7Link to Ensembl Protein Viewer:ENSMUSP00000112520.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120452Re-query CCDS DB by Protein ID:ENSMUSP00000112520
Original member Current member NCBI NM_021422.4 NP_067397.1 Accepted alive Link to Nucleotide Sequence:NM_021422.4Link to Protein Sequence:NP_067397.1Re-query CCDS DB by Nucleotide ID:NM_021422Re-query CCDS DB by Protein ID:NP_067397Link to BLAST:NP_067397.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067397.1 397 Q9JMC3 397 100% 0 0

Chromosomal Locations for CCDS 23193.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 54699729 54699860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54706063 54706243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54708383 54708487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54709133 54709360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54710502 54710732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54714270 54714370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54714461 54714676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1194 nt):
ATGGTGAAGGAGACCCAGTACTATGACATCCTGGGGGTGAAGCCCAGCGCGTCCCCGGAGGAGATCAAGA
AGGCCTATCGGAAGCTGGCGCTCAAGTACCACCCGGACAAGAACCCGGATGAGGGCGAGAAGTTTAAACT
TATATCCCAGGCATATGAAGTACTTTCAGATCCTAAGAAAAGAGACATCTATGACCAAGGTGGAGAACAG
GCAATTAAAGAAGGGGGATCGGGCAGCCCCAGCTTCTCTTCACCCATGGATATCTTTGATATGTTCTTTG
GTGGTGGAGGACGGATGACTAGAGAGAGAAGAGGCAAGAATGTTGTCCACCAGCTGTCAGTAACTCTGGA
AGACTTATATAATGGAATCACTAAGAAACTGGCCCTCCAGAAAAATGTAATTTGTGAGAAATGTGAAGGC
ATCGGTGGGAAAAAGGGGTCTGTGGAGAAGTGCCCCCTGTGCAAGGGGCGGGGGATGCAGGTCCACATCC
AGCAGATTGGGCCGGGCATGGTGCAGCAGATCCAGACTGTGTGCATCGAGTGCAAGGGCCAGGGCGAGCG
CATCAACCCCAAGGACCGCTGTGAGAACTGCAGCGGAGCCAAGGTTACCCGAGAGAAGAAGATCATTGAG
GTGCACGTGGAGAAAGGTATGAAGGATGGGCAAAAGATACTGTTTCATGGAGAAGGAGATCAGGAGCCTG
AGCTGGACCCTGGCGATGTGATAATTGTGCTTGATCAGAAGGATCATAGTGTCTTTCAGAGACGAGGCCA
GGATCTGATCATGAAAATGAAAATTCAGCTCTCTGAAGCTCTTTGTGGCTTCAAGAAGACAATAAAAACG
CTGGATGATCGAGTCCTTGTCATTTCATCTAAGTCAGGTGAGGTGATAAAGCATGGGGACCTGAAGTGTA
TCCGCAACGAGGGGATGCCCATCTACAAAGCCCCCCTGGAGAAGGGGGTGATGATCATACAGTTTTTAGT
AGTCTTCCCTGAAAAACAGTGGCTCTCTCAGGAGAAGCTTCCTCAGCTGGAGGCTCTGCTTCCCCCTCGG
CAGAAGGTGAGGATCACAGATGACATGGATCAGGTGGAGTTGAAGGAGTTCAATCCCAACGAGCAGAGCT
GGCGCCAGCACAGGGAGGCCTATGAGGAAGATGACGAAGAGCCCCGCGCTGGCGTGCAGTGCCAGACGGC
ATGA

Translation (397 aa):
MVKETQYYDILGVKPSASPEEIKKAYRKLALKYHPDKNPDEGEKFKLISQAYEVLSDPKKRDIYDQGGEQ
AIKEGGSGSPSFSSPMDIFDMFFGGGGRMTRERRGKNVVHQLSVTLEDLYNGITKKLALQKNVICEKCEG
IGGKKGSVEKCPLCKGRGMQVHIQQIGPGMVQQIQTVCIECKGQGERINPKDRCENCSGAKVTREKKIIE
VHVEKGMKDGQKILFHGEGDQEPELDPGDVIIVLDQKDHSVFQRRGQDLIMKMKIQLSEALCGFKKTIKT
LDDRVLVISSKSGEVIKHGDLKCIRNEGMPIYKAPLEKGVMIIQFLVVFPEKQWLSQEKLPQLEALLPPR
QKVRITDDMDQVELKEFNPNEQSWRQHREAYEEDDEEPRAGVQCQTA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH