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Report for CCDS16809.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16809.1 Public Mus musculus 2 Otor 23 108 98 CCDS HistoryNCBI Gene:57329Re-query CCDS DB by CCDS ID:16809.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16809.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028902.2 ENSMUSP00000028902.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028902.2Link to Ensembl Protein Viewer:ENSMUSP00000028902.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000028902Re-query CCDS DB by Protein ID:ENSMUSP00000028902
Original member Current member NCBI NM_020595.3 NP_065620.1 Accepted alive Link to Nucleotide Sequence:NM_020595.3Link to Protein Sequence:NP_065620.1Re-query CCDS DB by Nucleotide ID:NM_020595Re-query CCDS DB by Protein ID:NP_065620Link to BLAST:NP_065620.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065620.1 128 Q9JIE3 128 100% 0 0

Chromosomal Locations for CCDS 16809.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 143078500 143078614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143078924 143079063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143079926 143080033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143081155 143081178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (387 nt):
ATGGCAAGGATATTGATTCTTTTGCTTGGGGGCCTTGTGGTTCTATGTGCCGGGCATGGTGTATTTATGG
ATAAACTTTCTTCTAAGAAGTTGTGTGCGGATGAGGAGTGTGTCTATACTATTTCTCTGGCAAGAGCACA
GGAAGATTACAATGCCCCAGACTGTAGGTTCATCGATGTCAAGAAAGGGCAGCAGATCTATGTTTACTCC
AAGCTGGTAACAGAAAACGGAGCTGGAGAGTTTTGGGCTGGCAGTGTTTATGGTGACCACCAGGATGAGA
TGGGAATTGTAGGTTATTTCCCCAGCAACTTGGTGAAGGAGCAGCGTGTATACCAGGAGGCCACCAAGGA
GATCCCAACCACGGATATTGACTTCTTCTGTGAATAA

Translation (128 aa):
MARILILLLGGLVVLCAGHGVFMDKLSSKKLCADEECVYTISLARAQEDYNAPDCRFIDVKKGQQIYVYS
KLVTENGAGEFWAGSVYGDHQDEMGIVGYFPSNLVKEQRVYQEATKEIPTTDIDFFCE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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