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Report for CCDS39041.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39041.1 Public Mus musculus 5 Rnf32 23 108 98 CCDS HistoryNCBI Gene:56874Re-query CCDS DB by CCDS ID:39041.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39041.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001247.11 ENSMUSP00000001247.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001247.11Link to Ensembl Protein Viewer:ENSMUSP00000001247.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000001247Re-query CCDS DB by Protein ID:ENSMUSP00000001247
Original member Current member EBI ENSMUST00000160246.7 ENSMUSP00000124657.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160246.7Link to Ensembl Protein Viewer:ENSMUSP00000124657.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160246Re-query CCDS DB by Protein ID:ENSMUSP00000124657
Original member Current member EBI ENSMUST00000168460.7 ENSMUSP00000132213.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168460.7Link to Ensembl Protein Viewer:ENSMUSP00000132213.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168460Re-query CCDS DB by Protein ID:ENSMUSP00000132213
Original member Current member NCBI NM_001289757.1 NP_001276686.1 Accepted alive Link to Nucleotide Sequence:NM_001289757.1Link to Protein Sequence:NP_001276686.1Re-query CCDS DB by Nucleotide ID:NM_001289757Re-query CCDS DB by Protein ID:NP_001276686Link to BLAST:NP_001276686.1
Original member Current member NCBI NM_021470.6 NP_067445.3 Accepted alive Link to Nucleotide Sequence:NM_021470.6Link to Protein Sequence:NP_067445.3Re-query CCDS DB by Nucleotide ID:NM_021470Re-query CCDS DB by Protein ID:NP_067445Link to BLAST:NP_067445.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276686.1 368 Q9JIT1 368 100% 0 0
NP_067445.3 368 Q9JIT1 368 100% 0 0

Chromosomal Locations for CCDS 39041.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 29198006 29198020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 29198574 29198838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 29203055 29203197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 29205669 29205701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 29206174 29206298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 29206696 29206804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 29224117 29224284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 29225043 29225291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1107 nt):
ATGCTAAGAAATAAGGATCGTTCATCTAACAAAGGTAACTTAGCAGTCACTGCAGTTGCCTTACAGGACC
ACCTATTACATGATCTTCAACTTGGACATCTCTCGGTAGCAGATCCTTGTAAGATAAAAGCACGAAAGAA
AGAGAAGAAGTCAAAATCTCTCAAAAGAGATGCAACAGCCATCATAGATACTGGGCTTAGAAAATCTACA
GAGGGTCCTAACATGGAAGATCCAGAGAAGGAATATGTTCTAGACCCCACACCACCACCATTAACTTTAG
CCCAGAAACTAGGCCTCTTGCCACCTCCCCCGTTGCCACTGTCATCAGATGAGTGGGAGAGAGTGAAGCA
GAGATCCCTTCTACAAGGGGACTCCATTCAGCCATGCCCAATATGTAAAGAAGAATTTGAGCTCCATCCC
CAGGTGCTGCTTTCCTGCTCACATGTATTCCATAGGGCATGCCTTCAGGCTTTTGAAAAGTTCACAAATA
AAAAAACCTGTCCCCTCTGTAGAAAGAACCAATATCAAACAAGAGTGATACATGATGGGGCTCGCCTGTT
CAGAGTAAAGTGTGCCACCAGGATCCAAGCCTATTGGCGAGGGTACATCGTTAGAAAGTGGTACAGAAAC
CTGAGGAAAATAATCCCGCCTTCGGATGCCAAATTAAGGAGAAAGTTCTTTGAGGAAAAGTTCACAGAGA
TCAGCCACCGAATCCTGTGCTCATACAACACCAACATAGATGAACTCTTCTCAGAAATTGATGTCTGCTT
GGCGGTAAACCGTAGCATTCTTCAGCAGCTAGATGAAAGGTGTGGCCAGATAATCACCAAGGAGGACTGG
GAGAAAATCCAAGCACAGGCTGCTCACCATGAGATCTATGAATGTTCCATCTGCCTGACTCCACTCTCCT
TTCATGGCGATGGCCGGCAAGCAGCCATAGGAACCAGCAGCCAGCGTCCCAGAGAGACAGTCCTCCTGTC
CTGTGCACATCTGTTCCACAATGCCTGCCTCCTGGCTTTGGAGGAGTTTTCTTTAGGAGACAATGCCCCT
TTCCATGTCTGTCCTCTCTGTCGCTCCTGCTACCAAAAGAAAATTGTTGAATGCTGA

Translation (368 aa):
MLRNKDRSSNKGNLAVTAVALQDHLLHDLQLGHLSVADPCKIKARKKEKKSKSLKRDATAIIDTGLRKST
EGPNMEDPEKEYVLDPTPPPLTLAQKLGLLPPPPLPLSSDEWERVKQRSLLQGDSIQPCPICKEEFELHP
QVLLSCSHVFHRACLQAFEKFTNKKTCPLCRKNQYQTRVIHDGARLFRVKCATRIQAYWRGYIVRKWYRN
LRKIIPPSDAKLRRKFFEEKFTEISHRILCSYNTNIDELFSEIDVCLAVNRSILQQLDERCGQIITKEDW
EKIQAQAAHHEIYECSICLTPLSFHGDGRQAAIGTSSQRPRETVLLSCAHLFHNACLLALEEFSLGDNAP
FHVCPLCRSCYQKKIVEC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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