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Report for CCDS16812.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16812.1 Public Mus musculus 2 Dstn 23 108 98 CCDS HistoryNCBI Gene:56431Re-query CCDS DB by CCDS ID:16812.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16812.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103172.3 ENSMUSP00000099461.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103172.3Link to Ensembl Protein Viewer:ENSMUSP00000099461.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103172Re-query CCDS DB by Protein ID:ENSMUSP00000099461
Original member Current member NCBI NM_019771.2 NP_062745.1 Accepted alive Link to Nucleotide Sequence:NM_019771.2Link to Protein Sequence:NP_062745.1Re-query CCDS DB by Nucleotide ID:NM_019771Re-query CCDS DB by Protein ID:NP_062745Link to BLAST:NP_062745.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062745.1 165 Q9R0P5 165 100% 0 0

Chromosomal Locations for CCDS 16812.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 143915645 143915647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143938385 143938692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143939952 143940028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143942127 143942236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (498 nt):
ATGGCCTCAGGAGTTCAGGTTGCGGATGAAGTATGTCGCATTTTCTACGACATGAAAGTTCGGAAATGTT
CCACACCAGAAGAAATCAAGAAAAGAAAGAAGGCTGTCATTTTCTGTCTCAGTGCAGACAAAAAGTGCAT
AGTCGTTGAAGAAGGCAAAGAGATCTTGGTGGGAGATGTTGGCGCCACCATAACTGATCCTTTCAAGCAT
TTTGTCGGAATGCTTCCTGAAAAAGATTGTCGCTATGCTTTGTATGACGCCAGCTTTGAGACCAAGGAGT
CCAGGAAAGAAGAGCTGATGTTCTTCCTGTGGGCACCAGAACAAGCACCTCTGAAAAGTAAAATGATCTA
TGCAAGCTCGAAGGATGCCATCAAGAAGAAATTTCCAGGTATAAAGCATGAGTATCAAGCAAATGGGCCA
GAAGACCTCAATCGGACCTGTATTGCTGAAAAGCTAGGTGGCTCCTTAATTGTAGCCTTTGAAGGATCCC
CTGTGTAG

Translation (165 aa):
MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIVVEEGKEILVGDVGATITDPFKH
FVGMLPEKDCRYALYDASFETKESRKEELMFFLWAPEQAPLKSKMIYASSKDAIKKKFPGIKHEYQANGP
EDLNRTCIAEKLGGSLIVAFEGSPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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