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Report for CCDS20242.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20242.1 Public Mus musculus 6 Ggcx 23 108 98 CCDS HistoryNCBI Gene:56316Re-query CCDS DB by CCDS ID:20242.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20242.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065906.8 ENSMUSP00000070109.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065906.8Link to Ensembl Protein Viewer:ENSMUSP00000070109.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000065906Re-query CCDS DB by Protein ID:ENSMUSP00000070109
Original member NCBI NM_019802.5 NP_062776.1 Updated not alive Link to Nucleotide Sequence:NM_019802.5Link to Protein Sequence:NP_062776.1Re-query CCDS DB by Nucleotide ID:NM_019802Re-query CCDS DB by Protein ID:NP_062776
Current member NCBI NM_019802.6 NP_062776.1 Accepted alive Link to Nucleotide Sequence:NM_019802.6Link to Protein Sequence:NP_062776.1Re-query CCDS DB by Nucleotide ID:NM_019802Re-query CCDS DB by Protein ID:NP_062776Link to BLAST:NP_062776.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062776.1 757 Q9QYC7 757 100% 0 0

Chromosomal Locations for CCDS 20242.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 72414407 72414449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72414672 72414842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72417855 72418013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72418301 72418466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72422416 72422494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72423934 72424040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72425786 72425949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72426361 72426626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72427042 72427173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72427898 72428049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72428458 72428627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72428797 72428927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72429133 72429280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72429444 72429639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72429967 72430156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2274 nt):
ATGGCTGTGCACCGCGGCTCCGCACTGGTTGCTCCCGCCTCAGATAAAGTACAGAAAAACAAGTCTGCAC
AGACATCAGGACTGAAACAGGGCAGCCGAATGGAGAAAATTTTAGGGTTTGAATGGACAGATTTATCTAG
CTGGCAGAGTGTCGTGACCCTGCTTAACAAACCAACGGACCCTGCAAACCTGGCTGTCTTTCGTTTTCTC
TTTGCTTTCTTGATGCTGCTGGACATTCCCCAGGAACGCGGCCTTAGCTCCCTGGACCGAAAATACTTGG
ATGGGCTGGATGTGTGCCGTTTCCCCTTGCTGGATGCCTTGCGCCCACTGCCACTGGACTGGATGTATCT
TGTCTACACCATCATGTTTCTGGGGGCACTGGGCATGATGCTGGGGCTATGCTACCGGCTAAGCTGTGTG
TTATTCCTGCTACCGTACTGGTACGTGTTTCTCCTGGACAAGACTTCGTGGAACAATCACTCCTATCTGT
ATGGTTTGTTGGCCTTTCAGTTGACATTCATGGATGCAAACCACTACTGGTCTGTGGATGGCTTGCTGAA
TGCCCGAAAGAAGAATGCTCACGTGCCCCTTTGGAACTACACAGTTCTGCGTGGCCAGATCTTCATCGTG
TACTTCATCGCGGGTGTGAAGAAGCTCGATGCTGACTGGGTTGGGGGCTACTCCATGGAGCACCTGTCCC
GGCACTGGCTCTTCAGTCCCTTCAAGCTGGTGTTGTCGGAGGAGCTGACAAGCCTGCTGGTAGTACACTG
GTGTGGGCTTCTCCTTGACCTCTCGGCTGGCTTCCTGCTCTTCTTTGATGCCTCCAGACCCGTCGGCCTG
TTCTTCGTGTCCTACTTTCACTGCATGAACTCGCAGCTCTTCAGCATCGGGATGTTTCCCTATGTCATGC
TGGCCAGCAGCCCTCTCTTCTGCTCAGCTGAATGGCCTCGGAAGTTGGTAGCCCGATGCCCGAAAAGGCT
GCAAGAGCTGCTGCCCACCAAAGCCGCTCCTCGGCCTAGTGCTTCCTGTGTGTATAAGAGGTCCCGGGGC
AAAGCTGGCCCGAAGCCCGGGCTGCGCCACCAGCTGGGAGCCATCTTCACCCTGCTCTACCTCCTAGAGC
AGCTCTTCCTGCCCTATTCCCACTTCCTGACCCAGGGTTACAATAACTGGACAAATGGGCTGTATGGCTA
TTCCTGGGACATGATGGTGCACTCCCGCTCCCACCAGCACGTAAAGATCACCTACCGCGACGGCCTCACG
GGCGAGCTGGGCTACCTTAACCCTGGGGTATTCACACAGAGCCGGCGATGGAAGGATCATGCAGACATGC
TGAAGCAATATGCCACTTGCCTGAGCCTCCTGCTTCCCAAGTACAATGTCACTGAGCCCCAGATCTACTT
TGATATTTGGGTCTCCATCAATGACCGCTTCCAGCAGAGGCTTTTTGACCCTCGTGTGGACATCGTGCAG
GCTGTCTGGTCCCCCTTCCAGCGCACACCTTGGGTGCAGCCACTCTTGATGGATTTATCTCCCTGGAGGA
CCAAGTTACAGGATATTAAGAGCAGTCTGGACAACCACACCGAGGTGGTCTTCATTGCAGATTTCCCTGG
GCTTCACTTGGAGAATTTTGTGAGTGAAGACCTGGGCAACACTAGCATCCAGCTGCTGCAGGGAGAAGTC
ACCGTGGAATTGGTGGCAGAACAGAAAAATCAGACTCTTCAAGAAGGAGAGAAAATGCAGTTGCCTGCTG
GAGAGTACCATAAAGTCTATACTGTATCATCTAGTCCTTCCTGCTACATGTACGTCTATGTCAACACTAC
AGAGGTCGCACTGGAGCAAGACCTGGCATATCTGCAAGAATTAAAGGAGAAGGTGGAGAACGGAAGTGAA
ACAGGGCCCCTGCCTCCAGAACTTCAGCCTCTTTTGGAAGGGGAAGTAAAAGGGGGCCCTGAGCCAACAC
CTCTGGTCCAAACTTTTCTCAGACGACAGAGGAAGCTCCAAGAAATTGAACGCAGGCGAAATAGCCCTTT
CCATGAGCGATTTCTCCGCTTCGTGCTGCGAAAGCTCTACGTCTTTCGACGCAGCTTCCTGATGACTCGA
ATTTCACTCCGAAACCTGCTATTAGGCCGCCCTTCCCTAGAGCAACTAGCCCAAGAGGTGACATATGCAA
ACTTGCGACCATTTGAACCAGTTGATGAGTCAAGTGCTTCAAACACAGATTCTTCAAATCACCCGTCAGA
GCCAGATTCTGAGCATGTTCACTCTGAGTTCTGA

Translation (757 aa):
MAVHRGSALVAPASDKVQKNKSAQTSGLKQGSRMEKILGFEWTDLSSWQSVVTLLNKPTDPANLAVFRFL
FAFLMLLDIPQERGLSSLDRKYLDGLDVCRFPLLDALRPLPLDWMYLVYTIMFLGALGMMLGLCYRLSCV
LFLLPYWYVFLLDKTSWNNHSYLYGLLAFQLTFMDANHYWSVDGLLNARKKNAHVPLWNYTVLRGQIFIV
YFIAGVKKLDADWVGGYSMEHLSRHWLFSPFKLVLSEELTSLLVVHWCGLLLDLSAGFLLFFDASRPVGL
FFVSYFHCMNSQLFSIGMFPYVMLASSPLFCSAEWPRKLVARCPKRLQELLPTKAAPRPSASCVYKRSRG
KAGPKPGLRHQLGAIFTLLYLLEQLFLPYSHFLTQGYNNWTNGLYGYSWDMMVHSRSHQHVKITYRDGLT
GELGYLNPGVFTQSRRWKDHADMLKQYATCLSLLLPKYNVTEPQIYFDIWVSINDRFQQRLFDPRVDIVQ
AVWSPFQRTPWVQPLLMDLSPWRTKLQDIKSSLDNHTEVVFIADFPGLHLENFVSEDLGNTSIQLLQGEV
TVELVAEQKNQTLQEGEKMQLPAGEYHKVYTVSSSPSCYMYVYVNTTEVALEQDLAYLQELKEKVENGSE
TGPLPPELQPLLEGEVKGGPEPTPLVQTFLRRQRKLQEIERRRNSPFHERFLRFVLRKLYVFRRSFLMTR
ISLRNLLLGRPSLEQLAQEVTYANLRPFEPVDESSASNTDSSNHPSEPDSEHVHSEF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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