NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS48673.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48673.1 Public Mus musculus 10 Metap2 23 108 98 CCDS HistoryNCBI Gene:56307Re-query CCDS DB by CCDS ID:48673.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48673.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047910.14 ENSMUSP00000048285.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047910.14Link to Ensembl Protein Viewer:ENSMUSP00000048285.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000047910Re-query CCDS DB by Protein ID:ENSMUSP00000048285
Original member Current member EBI ENSMUST00000180840.7 ENSMUSP00000138006.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000180840.7Link to Ensembl Protein Viewer:ENSMUSP00000138006.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000180840Re-query CCDS DB by Protein ID:ENSMUSP00000138006
Original member Current member NCBI NM_019648.3 NP_062622.1 Accepted alive Link to Nucleotide Sequence:NM_019648.3Link to Protein Sequence:NP_062622.1Re-query CCDS DB by Nucleotide ID:NM_019648Re-query CCDS DB by Protein ID:NP_062622Link to BLAST:NP_062622.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062622.1 478 O08663 478 100% 0 0

Chromosomal Locations for CCDS 48673.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 93861350 93861602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93862377 93862492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93862930 93863033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93865407 93865503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93868867 93868961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93870117 93870298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93871488 93871649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93879540 93879642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93880073 93880138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93886994 93887101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93889538 93889688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1437 nt):
ATGGCGGGCGTGGAGCAGGCAGCGTCCTTCGGGGGCCACCTGAATGGCGACCTGGATCCAGACGACAGGG
AAGAGGGAACCTCCAGCACGGCCGAGGAAGCCGCCAAGAAGAAAAGACGGAAGAAGAAGAAGGGCAAAGG
GGCTGTGTCAGCAGTGCAACAAGAACTTGATAAAGAATCCGGAGCCTTGGTGGATGAAGTAGCAAAACAG
CTGGAGAGCCAAGCACTGGAGGAGAAGGAGAGAGATGACGACGATGAAGATGGAGATGGTGATGCTGATG
GTGCAACTGGGAAGAAGAAGAAAAAGAAGAAGAAGAAGAGAGGACCAAAAGTTCAAACAGACCCTCCCTC
AGTTCCAATATGTGACCTGTATCCTAATGGTGTATTTCCCAAAGGACAAGAGTGTGAATACCCACCCACA
CAAGATGGGCGGACAGCTGCTTGGAGAACCACAAGTGAGGAAAAAAAGGCCCTAGACCAGGCCAGTGAGG
AGATCTGGAACGACTTCCGAGAAGCTGCGGAGGCACATCGGCAAGTTAGGAAATATGTCATGAGCTGGAT
CAAGCCTGGGATGACGATGATAGAAATCTGTGAGAAGTTGGAAGACTGTTCCCGAAAGCTAATAAAGGAA
AATGGGTTAAATGCAGGCCTGGCGTTCCCCACTGGGTGTTCTCTCAACAACTGTGCTGCCCATTACACTC
CCAATGCTGGTGACACGACAGTCTTGCAGTATGATGACATCTGTAAGATAGACTTTGGAACACATATAAG
TGGTAGAATAATCGATTGTGCTTTTACTGTTACTTTTAATCCCAAATATGACATACTATTAACAGCTGTA
AAGGATGCCACTAATACTGGAATAAAGTGTGCTGGGATTGACGTTCGTCTCTGCGATGTCGGTGAGGCCA
TTCAAGAAGTTATGGAATCCTATGAAGTAGAAATAGATGGGAAGACATACCAAGTGAAACCCATACGTAA
CTTAAATGGACATTCAATTGGGCCATATAGAATTCACGCTGGAAAAACGGTGCCCATTGTGAAAGGAGGG
GAAGCTACAAGAATGGAGGAAGGAGAGGTGTATGCCATTGAGACCTTTGGGAGCACGGGGAAGGGCGTGG
TTCATGACGACATGGAATGTTCACACTACATGAAAAATTTTGATGTGGGGCACGTGCCAATAAGGCTTCC
AAGAACAAAACACTTGTTAAATGTCATCAACGAAAACTTCGGTACCCTTGCCTTCTGCCGAAGGTGGCTG
GATCGCTTGGGAGAAAGTAAATACTTGATGGCTCTGAAGAATCTGTGTGACTTGGGCATTGTAGATCCAT
ACCCACCACTGTGTGACATTAAAGGGTCATATACAGCACAGTTTGAACACACTATACTGTTGCGTCCAAC
CTGTAAAGAAGTTGTCAGCAGAGGAGATGACTATTAA

Translation (478 aa):
MAGVEQAASFGGHLNGDLDPDDREEGTSSTAEEAAKKKRRKKKKGKGAVSAVQQELDKESGALVDEVAKQ
LESQALEEKERDDDDEDGDGDADGATGKKKKKKKKKRGPKVQTDPPSVPICDLYPNGVFPKGQECEYPPT
QDGRTAAWRTTSEEKKALDQASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKE
NGLNAGLAFPTGCSLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTVTFNPKYDILLTAV
KDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSIGPYRIHAGKTVPIVKGG
EATRMEEGEVYAIETFGSTGKGVVHDDMECSHYMKNFDVGHVPIRLPRTKHLLNVINENFGTLAFCRRWL
DRLGESKYLMALKNLCDLGIVDPYPPLCDIKGSYTAQFEHTILLRPTCKEVVSRGDDY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH