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Report for CCDS26891.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26891.1 Public Mus musculus 14 Actr8 23 108 98 CCDS HistoryNCBI Gene:56249Re-query CCDS DB by CCDS ID:26891.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26891.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000016115.5 ENSMUSP00000016115.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000016115.5Link to Ensembl Protein Viewer:ENSMUSP00000016115.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000016115Re-query CCDS DB by Protein ID:ENSMUSP00000016115
Original member Current member EBI ENSMUST00000224797.1 ENSMUSP00000153076.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000224797.1Link to Ensembl Protein Viewer:ENSMUSP00000153076.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000224797Re-query CCDS DB by Protein ID:ENSMUSP00000153076
Original member Current member NCBI NM_027493.3 NP_081769.2 Accepted alive Link to Nucleotide Sequence:NM_027493.3Link to Protein Sequence:NP_081769.2Re-query CCDS DB by Nucleotide ID:NM_027493Re-query CCDS DB by Protein ID:NP_081769Link to BLAST:NP_081769.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081769.2 624 Q8R2S9 624 100% 0 0

Chromosomal Locations for CCDS 26891.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 29978466 29978588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 29982599 29982769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 29984030 29984140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 29985926 29986030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 29986277 29986450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 29986922 29987015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 29987219 29987351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 29988189 29988342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 29988953 29989048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 29989660 29989800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 29990704 29990968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 29991592 29991755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 29992961 29993104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1875 nt):
ATGACCCAAGCCGAGAAGGGGGACGCGGAGAACGGGAAGGAGAAGGGCGGGGAGAAGGAGAAGGAGCAGC
GCGGCGTGAAGCGGCCCATCGTACCCGCGTTGGTCCCCGAGTCGCTGCAGGAGCAAATCCAGAGCAACTT
CATTGTTGTCATACACCCAGGTTCAACAACTCTAAGACTTGGCCGAGCCACAGATACACTTCCGGTCAGT
GTTCCTCACGTCATTGCACGAAGACACAAACAACAAGGGCAGCCCCTGTACAAGGACAACTGGCTCCTAA
GGGAAGGACTAAATAAACCTGAAAGTAATGAACAAAGACAAAATGGCCTTAAAATGGTGGACCAGGCAAT
ATGGTCTAAAAAGATGTCAAACGGTACAAGGCGGATCCCTGTGTCACCAGAACAGACACGCTCCTACAAC
AAGCAGATGCGACCTGCCATTCTAGATCACTGTTCTGGAAACAAATGGACAAACACATCTCAGCAGCCTG
AGTATTTGGTAGGAGAAGAGGCCTTGTATGTTAACCCCCTGGACTGTTACAACATTCACTGGCCTATCAG
AAGGGGTCAGCTGAACATCCACCCAGGCCCCGGAGGCTCCCTCACAGCTGTTCTGGCAGACATTGAAGTG
ATCTGGTCTCATGCAATACAAAAGTATTTGGAAATCCCACTGAAAGATTTAAAGTATTACAGGTGCATCT
TGTTAATTCCAGATATCTATAACAAGCAGCATGTGAAAGAGCTGGTCCATATGATACTGATGAAGATGGG
CTTCGCAGGGATTGTGGTCCATCAGGAGTCTGTGTGCGCTACGTTTGGGAGCGGCTTGAGCAGCACCTGT
GTTGTAGATGTTGGGGACCAGAAAACAAGTGTGTGCTGTGTAGAGGATGGGGTGTCTCATCGGAACACAC
GGCTTTGTCTGGCCTATGGGGGCTCTGACGTGTCGAGGTGTTTTTACTGGCTCATGCAGCGAGCGGGATT
CCCTTACAGAGAGTGTCAGCTGACAAATAAAATGGATTGCCTCCTCTTGCAGCACCTTAAAGAAACCTTT
TGTCATTTAGATCAGGATATCTCCGGACTTCAGGACCATGAGTTTCAGATTCGGCATCCGGATTCCCCTG
CCCTGCTTTACCAGTTTCGATTAGGAGATGAAAAGCTCCAGGCTCCAATGGCGCTTTTTTACCCAGCAAC
CTTTGGGATCGTGGGACAGAAGATGACCACTCTGCAGCACAGGTCCCAGGGAGACCCTGAGGATCCCCAT
GATGAGCACTACCTGCTGGCCACCCAGAGCAAGCAAGAACAGTCTGCAAAAGCCACTGCTGACCGCAAGT
CTGCATCCAAACCCATTGGATTTGAAGGGGATCTGCGTGGCCAGTCCTCTGATCTTCCAGAAAGACTCCA
TTCCCAGGAGGTGGACCTGGCTTCTTCTCAGGGAGACTGTTTGATGGCGGGCAATGAGTCCGAGGAAGCC
CTCACTGCACTGATGTCCAGGAAAACTGCAATCTCGCTGTTTGAGGGGAAAGCCTTGGGCCTTGATAAGG
CCATCCTGCACAGCGTAGACTGTTGCTCATCTGATGATACCAAAAAGAAGATGTATAGCTCTATCCTGGT
TGTGGGAGGCGGTTTGATGTTTCATAAGGCTCAAGAGTTTCTCCAGCACAGAATTCTCAACAAAATGCCG
CCTTCATTCAGGCGAATTATTGAAAACGTGGATGTGATCACAAGGCCCAAGGACATGGACCCCCGGCTGA
TCGCATGGAAAGGAGGTGCAGTACTGGCGTGTTTGGACACCACTCAGGAACTGTGGATTTATCAGCGAGA
GTGGCAACGCTTTGGTGTCCGAATGTTACGGGAACGAGCTGCCTTTGTGTGGTGA

Translation (624 aa):
MTQAEKGDAENGKEKGGEKEKEQRGVKRPIVPALVPESLQEQIQSNFIVVIHPGSTTLRLGRATDTLPVS
VPHVIARRHKQQGQPLYKDNWLLREGLNKPESNEQRQNGLKMVDQAIWSKKMSNGTRRIPVSPEQTRSYN
KQMRPAILDHCSGNKWTNTSQQPEYLVGEEALYVNPLDCYNIHWPIRRGQLNIHPGPGGSLTAVLADIEV
IWSHAIQKYLEIPLKDLKYYRCILLIPDIYNKQHVKELVHMILMKMGFAGIVVHQESVCATFGSGLSSTC
VVDVGDQKTSVCCVEDGVSHRNTRLCLAYGGSDVSRCFYWLMQRAGFPYRECQLTNKMDCLLLQHLKETF
CHLDQDISGLQDHEFQIRHPDSPALLYQFRLGDEKLQAPMALFYPATFGIVGQKMTTLQHRSQGDPEDPH
DEHYLLATQSKQEQSAKATADRKSASKPIGFEGDLRGQSSDLPERLHSQEVDLASSQGDCLMAGNESEEA
LTALMSRKTAISLFEGKALGLDKAILHSVDCCSSDDTKKKMYSSILVVGGGLMFHKAQEFLQHRILNKMP
PSFRRIIENVDVITRPKDMDPRLIAWKGGAVLACLDTTQELWIYQREWQRFGVRMLRERAAFVW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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