NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18770.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18770.1 Public Mus musculus 4 Extl1 23 108 98 CCDS HistoryNCBI Gene:56219Re-query CCDS DB by CCDS ID:18770.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18770.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030643.2 ENSMUSP00000030643.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030643.2Link to Ensembl Protein Viewer:ENSMUSP00000030643.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000030643Re-query CCDS DB by Protein ID:ENSMUSP00000030643
Original member Current member NCBI NM_019578.2 NP_062524.2 Accepted alive Link to Nucleotide Sequence:NM_019578.2Link to Protein Sequence:NP_062524.2Re-query CCDS DB by Nucleotide ID:NM_019578Re-query CCDS DB by Protein ID:NP_062524Link to BLAST:NP_062524.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062524.2 669 Q9JKV7 669 100% 0 0

Chromosomal Locations for CCDS 18770.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 134357648 134357830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134357978 134358146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134359085 134359245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134359749 134359835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134360532 134360621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134362301 134362407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134362583 134362715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134363083 134363202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134364581 134364688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134364898 134364988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134370958 134371718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2010 nt):
ATGCTGTGGAGAAGAAAGTCCTTCTGGCTGGCGTTGTCAGCCTTCTGGCTCCTCCTCGTCCTCCTAGGAG
TCTTCCCCCTTCGCCTGGCAGTGTTGCCCGGTCCTCTTCCAGGGCGCTCCCAAGGCTGGCCCCGCTGGCT
GGATGCTGCCTTCTTACAGAGTTTCTCCCAGTCTGAGACGAACCCAGAAGATGTCGCACAGCTCCCTCGG
GTCTCTCGGGGAAGCAGCTGCACCTGGGGAGCCTGCTTTGACACCTCCAAGTGTAGGGGAAAGGTCCTCA
AGATCTTTGTGCACTCCCCGGCTGGTCCGACCTCTGAGGCTCAGCGCAGGATCCTGGATTCCTTGGAAGG
CTCCCGCTACTCTGCACTCAGCCCAGCAGACGCTTGCCTTCTCCTTTTTCTCCCCAGCCAGGATCGTAGA
GGAGCCTGCGGGCCCCTGCCTCCGAACTGGAACGGAGGCCGGAACCATCTGGTGTTGAGTCTCTACCCAG
CCCCTTGCACCAGGCTGGGACAGGCGATGGTAGCTGAGGCCAGCCCCTCCTCGGACATCTTCCGACCGGG
CTTCGATTTAGCGCTCCCGTATCTCCCCGAAGCTCACCCATTGCGAGGTGGGGCTCCCGGCAAGCTGCAG
CAGCACAGTCCCCAACCTGGGGCCACCTTACTGGCGGTAGCAGAGGAGAAAGGCAGGTGGCGTATCACAA
GCACCCACGCCTCAGCCTGCCTCTGGGACAGGCACTGTGAGCAAGACCCTGGACCCCAGCAGACCTACCC
AGGAGAGACCCTTCCCAATGCCACCTTCTGCCTCATCCCTGGTCACCGATCTGCCACCTCCTGCTTTCTC
CAAGCCCTTCAGGCCGGCTGCATCCCCGTGCTCCTCAGCCCCCGCTGGGAGCTGCCTTTCTCTGAAGTCA
TCGACTGGACCAAGGCAGCCATCATTGCTGATGAGAGACTCCCACTGCAGGTCCTGGCTGCCCTCCGTGA
AATGCTCCCTTCGAGGGTCCTCGCCCTGCGCCAGCAGACCCAGTTTCTGTGGACCGCTTACTTCTCCTCG
GTGGAAAAAGTTATCCATACCACCCTAGAGATTATTCAGGACCGGATCTGGGGTGCATCAGGTCACCCCT
CACTGATGTGGAATAGCCCCCCGGGAGCACTCTTGGCGCTGCCCACATTTTCCACGAGCCTTCAAGACTT
CCCCTTTTATCATCTGCAACTGGGCTCTGGCCCTGGGAGCAGTTTCAGCGCCGTGATCTGGGTGGGAGCC
TCTGGAGAGTCCCTGCTGAAGCTCATCCAGGAGGTGGCAGGTTCTCGGCACTGTGCCCAGATCCTGATTC
TCTGGAACAGTGAGAAGCTGCCCCCTGACAGGTGGCCCGAGACAGCAGTGCCCCTAACAGTCATCAAGGG
GCACAGGAAGGTCAGCAACCGGTTCTTCCCGTACAGCAACATCAGCACCAATGTTATCCTCAGCCTTGAT
GCTCAGAGCACTCTTTCTACCAGTGAGGTGGACTTTGCCTTTGTGGTGTGGCAGAGCTTTCCTGAGCGGA
TGGTGGGCTTTCTGTCTGGAAGCCACTTCTGGGATGAGGCCCAGGGTGGCTGGGGCTACCGTACTGGGAT
GACCAATGAGTTCTCCATGGTCCTGACCACGGCTGCCTTCTACCACAGGTACTACCACACCCTCTTCACC
CACTCCCTGCCTAAGGCCCTGAGGACCATAGCTGATGAGACTCCCACCTGTGTTGACGTCCTGATGAACT
TCCTGGTAGCCACCGTCACCAAACTGCCCCCTATCAAGGTGCCTTATGGGAGGCAGCACCCGGAGGCTGT
GCCAATGGATTCTGGGGATCCACGACCAGTGCCGGAGCCTCAGCCCCTGGATCAGGACTGCATCAACCGT
TTAGCAGCAGGGTTCGGCCACATGCCTCTGGTTTCCTCTCAAGTGCGTCTGGATCCGGTGTTGTTCAAGG
ACCCGGTATCGGTGCAACGCAAGAAGTATCGCAGTCTAGAGAAGCCATAG

Translation (669 aa):
MLWRRKSFWLALSAFWLLLVLLGVFPLRLAVLPGPLPGRSQGWPRWLDAAFLQSFSQSETNPEDVAQLPR
VSRGSSCTWGACFDTSKCRGKVLKIFVHSPAGPTSEAQRRILDSLEGSRYSALSPADACLLLFLPSQDRR
GACGPLPPNWNGGRNHLVLSLYPAPCTRLGQAMVAEASPSSDIFRPGFDLALPYLPEAHPLRGGAPGKLQ
QHSPQPGATLLAVAEEKGRWRITSTHASACLWDRHCEQDPGPQQTYPGETLPNATFCLIPGHRSATSCFL
QALQAGCIPVLLSPRWELPFSEVIDWTKAAIIADERLPLQVLAALREMLPSRVLALRQQTQFLWTAYFSS
VEKVIHTTLEIIQDRIWGASGHPSLMWNSPPGALLALPTFSTSLQDFPFYHLQLGSGPGSSFSAVIWVGA
SGESLLKLIQEVAGSRHCAQILILWNSEKLPPDRWPETAVPLTVIKGHRKVSNRFFPYSNISTNVILSLD
AQSTLSTSEVDFAFVVWQSFPERMVGFLSGSHFWDEAQGGWGYRTGMTNEFSMVLTTAAFYHRYYHTLFT
HSLPKALRTIADETPTCVDVLMNFLVATVTKLPPIKVPYGRQHPEAVPMDSGDPRPVPEPQPLDQDCINR
LAAGFGHMPLVSSQVRLDPVLFKDPVSVQRKKYRSLEKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH