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Report for CCDS21774.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21774.1 Public Mus musculus 7 Gde1 23 108 98 CCDS HistoryNCBI Gene:56209Re-query CCDS DB by CCDS ID:21774.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21774.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038791.14 ENSMUSP00000046371.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038791.14Link to Ensembl Protein Viewer:ENSMUSP00000046371.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000038791Re-query CCDS DB by Protein ID:ENSMUSP00000046371
Original member Current member NCBI NM_019580.4 NP_062526.1 Accepted alive Link to Nucleotide Sequence:NM_019580.4Link to Protein Sequence:NP_062526.1Re-query CCDS DB by Nucleotide ID:NM_019580Re-query CCDS DB by Protein ID:NP_062526Link to BLAST:NP_062526.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062526.1 331 Q9JL56 331 100% 0 0

Chromosomal Locations for CCDS 21774.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 118689003 118689150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118691583 118691794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118694493 118694585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118695036 118695141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118698555 118698730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118705390 118705650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (996 nt):
ATGTGGCTGTGGGAGGACCAGGGCGGCCTCCTGGGCCCCTTCTCCTTCGTGCTGGTGCTGCTGCTGGTGG
TGACACGCAGCCCCTTCAACGCCTGCGTGCTCACCGGCAGCCTCTACATCCTGCTGCGGTTCTTCAGCTT
CGAGCCGGTGCCGTCCCGCCGGGCCCTGCAGGTGCTCAAGCCCCGTGACCGCGTGTCCGCCATCGCCCAT
CGCGGCGGCAGCCACGACGCGCCCGAGAACACGCTGGCGGCCATCCGGCAGGCAGCTAAGAATGGAGCAA
CAGGTGTGGAGCTGGACATCGAGTTTACTTCTGATGGAGTTCCTGTCTTGATGCACGATAACACAGTAGA
TAGGACAACAGACGGGTCTGGCCGACTATGTGATCTGACATTTGAACAAGTTAGGAAACTTAACCCTGCA
GCAAATCACAGACTCAGAAACGAGTTCCCTGATGAAAGGATCCCTACCCTGAAGGAAGCTGTCACAGAGT
GCCTCCGCCATAACCTCACCATCTTCTTTGATGTCAAAGGCCATGCAGATATGGCTTCTGCTGCTCTAAA
GAATATATACACGGAATTTCCACAGCTGTACAATAACAGTATGGTCTGCTCATTCTTGCCGGAAGTCATC
TATAAAATGAGACAAACGGATCAGAAGGTAATCACAGCCCTAACTCACAGGCCTTGGAGCCTGAGCCACA
CTGGAGATGGGAAGCCTCGCTACAGCGTCTTTTGGAAGCAGTCTGTGTTTGTGGTGTTGGACATCTTGCT
GGACTGGAGCATGCACAATGTCTTGTGGTACCTGTGTGGGATTTCAGCCTTCCTCATGCAGAAGGATTTT
GTCTCCCCGGACTATTTGAAGAAGTGGTCAGCTAAAGGAATCCAGGTTGTGAGTTGGACTGTCAATACCT
TTGATGAAAAGAATTACTACGAGTCCCACCTTGGGTCCAGCTACATCACTGACAGCATGCTAGAAGACTG
TGCACCTCACTTCTAG

Translation (331 aa):
MWLWEDQGGLLGPFSFVLVLLLVVTRSPFNACVLTGSLYILLRFFSFEPVPSRRALQVLKPRDRVSAIAH
RGGSHDAPENTLAAIRQAAKNGATGVELDIEFTSDGVPVLMHDNTVDRTTDGSGRLCDLTFEQVRKLNPA
ANHRLRNEFPDERIPTLKEAVTECLRHNLTIFFDVKGHADMASAALKNIYTEFPQLYNNSMVCSFLPEVI
YKMRQTDQKVITALTHRPWSLSHTGDGKPRYSVFWKQSVFVVLDILLDWSMHNVLWYLCGISAFLMQKDF
VSPDYLKKWSAKGIQVVSWTVNTFDEKNYYESHLGSSYITDSMLEDCAPHF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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