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Report for CCDS28526.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28526.1 Public Mus musculus 17 Msln 23 108 98 CCDS HistoryNCBI Gene:56047Re-query CCDS DB by CCDS ID:28526.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28526.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000238120.1 ENSMUSP00000158357.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238120.1Link to Ensembl Protein Viewer:ENSMUSP00000158357.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238120Re-query CCDS DB by Protein ID:ENSMUSP00000158357
Original member Current member EBI ENSMUST00000237359.1 ENSMUSP00000158474.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000237359.1Link to Ensembl Protein Viewer:ENSMUSP00000158474.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000237359Re-query CCDS DB by Protein ID:ENSMUSP00000158474
Original member Current member NCBI NM_001356286.1 NP_001343215.1 Accepted alive Link to Nucleotide Sequence:NM_001356286.1Link to Protein Sequence:NP_001343215.1Re-query CCDS DB by Nucleotide ID:NM_001356286Re-query CCDS DB by Protein ID:NP_001343215Link to BLAST:NP_001343215.1
Original member Current member NCBI NM_018857.2 NP_061345.1 Accepted alive Link to Nucleotide Sequence:NM_018857.2Link to Protein Sequence:NP_061345.1Re-query CCDS DB by Nucleotide ID:NM_018857Re-query CCDS DB by Protein ID:NP_061345Link to BLAST:NP_061345.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343215.1 625 Q61468 625 100% 0 0
NP_061345.1 625 Q61468 625 100% 0 0

Chromosomal Locations for CCDS 28526.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 25748742 25748830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25748901 25749087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25749449 25749543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25749826 25749953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25750031 25750173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25750259 25750414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25750675 25750853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25751079 25751178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25751253 25751343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25751570 25751763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25751856 25751985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25752289 25752374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25752942 25753062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25753378 25753424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25753774 25753817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25754132 25754219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1878 nt):
ATGGCCTTGCCAACAGCTCGACCCCTGCTGGGGTCCTGTGGAAGTCCCATCTGCAGCCGAAGCTTCCTAC
TGCTTCTCCTTAGTCTTGGGTGGATACCACGTCTGCAGACCCAGACTACAAAGACAAGCCAGGAGGCCAC
ACTCCTCCATGCTGTGAACGGTGCCGCTGACTTTGCCAGTCTCCCCACAGGCCTCTTTCTTGGCCTCACA
TGTGAGGAGGTATCTGACCTGAGCATGGAACAAGCCAAGGGGCTGGCTATGGCTGTAAGACAGAAGAACA
TTACACTCCGGGGACATCAGCTGCGTTGTCTGGCACGTCGCCTTCCTAGGCACCTCACCGACGAGGAACT
GAATGCTCTTCCACTGGACCTGCTGCTCTTCCTCAACCCAGCCATGTTTCCAGGGCAACAGGCTTGTGCC
CACTTCTTCTCCCTCATCTCTAAAGCCAATGTGGATGTACTCCCACGGAGGTCTCTGGAGCGCCAGAGGC
TGCTGATGGAGGCTCTGAAGTGCCAGGGCGTGTATGGATTTCAAGTGAGTGAGGCAGATGTGCGGGCTCT
CGGAGGCCTGGCCTGTGACCTGCCTGGGAAATTTGTGGCCAGATCTTCCGAAGTTCTCCTCCCCTGGCTG
GCAGGATGCCAAGGACCCCTGGACCAGAGCCAGGAAAAGGCAGTCAGGGAGGTTCTGAGGAGTGGAAGAA
CCCAATATGGCCCCCCATCGAAGTGGTCAGTCTCCACCCTGGATGCCCTGCAGAGCTTGGTAGCAGTGTT
GGATGAGTCCATCGTCCAGAGCATCCCCAAGGATGTCAAAGCTGAATGGCTGCAACACATCTCCAGAGAC
CCCTCCAGGCTGGGGTCTAAGCTGACCGTCATACACCCAAGGTTCCGACGGGATGCAGAACAGAAAGCCT
GCCCTCCAGGGAAGGAGCCCTACAAGGTGGATGAAGACCTCATCTTCTACCAGAATTGGGAGCTGGAGGC
TTGTGTAGATGGCACCATGCTGGCCAGACAAATGGACCTTGTGAACGAGATTCCCTTCACCTATGAGCAG
CTCAGTATCTTTAAGCACAAACTGGACAAGACCTACCCACAAGGCTATCCTGAGTCCCTGATCCAGCAGC
TGGGTCACTTCTTCAGATATGTTAGCCCTGAAGACATCCACCAGTGGAATGTGACCTCACCAGACACAGT
GAAAACTCTGCTCAAAGTCAGCAAAGGACAAAAGATGAATGCTCAGGCGATTGCCTTGGTCGCCTGCTAT
CTTCGGGGAGGAGGCCAGCTGGACGAGGATATGGTAAAAGCCCTGGGCGACATCCCGTTAAGCTATCTAT
GTGACTTCAGCCCCCAGGATCTGCACTCGGTACCCTCCAGTGTCATGTGGCTGGTTGGGCCCCAAGACCT
GGACAAGTGCAGCCAGAGGCATCTGGGTCTCCTCTACCAGAAGGCCTGCTCAGCCTTCCAGAATGTGAGC
GGCCTAGAATACTTTGAGAAAATCAAGACATTCCTGGGTGGGGCCTCCGTGAAGGACCTGCGGGCCCTCA
GCCAGCACAATGTGAGCATGGACATAGCCACTTTCAAGAGGCTGCAGGTGGATTCCCTGGTGGGGCTGAG
TGTGGCTGAGGTACAGAAACTTCTGGGGCCAAACATTGTGGACCTGAAGACCGAGGAGGATAAAAGCCCT
GTCCGTGACTGGCTGTTCCGGCAGCATCAGAAAGACCTAGACAGGCTGGGTTTGGGACTTCAGGGTGGCA
TCCCCAATGGCTACCTGGTCCTGGACTTCAATGTCCGAGAGGCCTTCTCCAGCAGAGCCTCACTCCTTGG
GCCAGGATTTGTATTAATATGGATTCCAGCTCTGCTCCCAGCTTTAAGGCTGAGCTGA

Translation (625 aa):
MALPTARPLLGSCGSPICSRSFLLLLLSLGWIPRLQTQTTKTSQEATLLHAVNGAADFASLPTGLFLGLT
CEEVSDLSMEQAKGLAMAVRQKNITLRGHQLRCLARRLPRHLTDEELNALPLDLLLFLNPAMFPGQQACA
HFFSLISKANVDVLPRRSLERQRLLMEALKCQGVYGFQVSEADVRALGGLACDLPGKFVARSSEVLLPWL
AGCQGPLDQSQEKAVREVLRSGRTQYGPPSKWSVSTLDALQSLVAVLDESIVQSIPKDVKAEWLQHISRD
PSRLGSKLTVIHPRFRRDAEQKACPPGKEPYKVDEDLIFYQNWELEACVDGTMLARQMDLVNEIPFTYEQ
LSIFKHKLDKTYPQGYPESLIQQLGHFFRYVSPEDIHQWNVTSPDTVKTLLKVSKGQKMNAQAIALVACY
LRGGGQLDEDMVKALGDIPLSYLCDFSPQDLHSVPSSVMWLVGPQDLDKCSQRHLGLLYQKACSAFQNVS
GLEYFEKIKTFLGGASVKDLRALSQHNVSMDIATFKRLQVDSLVGLSVAEVQKLLGPNIVDLKTEEDKSP
VRDWLFRQHQKDLDRLGLGLQGGIPNGYLVLDFNVREAFSSRASLLGPGFVLIWIPALLPALRLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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