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Report for CCDS45880.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45880.1 Public Homo sapiens 18 ZCCHC2 24 110 108 CCDS HistoryNCBI Gene:54877Re-query CCDS DB by CCDS ID:45880.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45880.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000269499.10 ENSP00000269499.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000269499.10Link to Ensembl Protein Viewer:ENSP00000269499.4Re-query CCDS DB by Nucleotide ID:ENST00000269499Re-query CCDS DB by Protein ID:ENSP00000269499
Original member Current member NCBI NM_017742.6 NP_060212.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017742.6Link to Protein Sequence:NP_060212.4Re-query CCDS DB by Nucleotide ID:NM_017742Re-query CCDS DB by Protein ID:NP_060212Link to BLAST:NP_060212.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060212.4 1178 Q9C0B9-1 1178 100% 0 0

Chromosomal Locations for CCDS 45880.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 62523425 62524363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62539681 62539792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62542498 62542574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62544802 62544873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62550348 62550460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62556203 62556297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62558687 62558770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62560587 62560644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62563009 62563144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62564571 62564635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62565002 62565096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62570103 62570231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62574057 62575550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62576512 62576579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3537 nt):
ATGCTGAGGATGAAGCTGCCGCTGAAGCCAACGCACCCCGCGGAGCCGCCGCCCGAGGCGGAGGAGCCCG
AGGCGGACGCGCGGCCGGGCGCGAAGGCGCCTTCGCGCCGCCGCCGCGACTGCCGCCCCCCGCCGCCGCC
GCCGCCGCCCGCGGGCCCGTCGCGGGGCCCTCTGCCGCCGCCGCCGCCGCCCCGGGGACTCGGGCCGCCT
GTTGCTGGTGGAGCGGCGGCGGGGGCGGGTATGCCGGGCGGCGGCGGGGGGCCCTCGGCGGCGCTGCGCG
AGCAGGAGCGGGTATACGAGTGGTTCGGGCTGGTGCTGGGCTCGGCGCAGCGCCTGGAGTTCATGTGCGG
GCTGCTGGACCTGTGCAACCCGCTGGAGCTGCGCTTCCTTGGCTCGTGCCTGGAGGACCTGGCGCGCAAG
GACTACCACTACCTGCGCGACTCGGAGGCCAAGGCCAACGGCCTCTCGGACCCGGGGCCGCTGGCCGACT
TCCGAGAGCCCGCGGTGCGCTCGCGCCTCATCGTCTACCTGGCGCTGCTGGGCTCGGAGAACCGGGAGGC
CGCTGGCCGTCTGCACCGCCTGCTACCCCAGGTGGACTCGGTGCTCAAAAGCCTGCGCGCGGCCCGGGGC
GAGGGCTCGCGGGGCGGCGCGGAGGACGAGCGCGGCGAGGACGGCGACGGCGAGCAGGACGCCGAGAAGG
ACGGCTCAGGCCCGGAAGGCGGCATTGTGGAGCCCCGGGTCGGCGGCGGGCTTGGCTCCAGGGCCCAGGA
GGAACTGCTGCTGCTCTTCACCATGGCCTCGCTGCACCCGGCTTTCTCCTTCCACCAGCGGGTCACCCTG
AGGGAACACTTGGAGAGGCTCCGCGCCGCGCTCCGCGGGGGCCCCGAGGACGCGGAGGTGGAGGTAGAGC
CGTGCAAGTTTGCCGGCCCCAGGGCCCAGAACAACTCTGCTCATGGTGATTACATGCAAAATAACGAGAG
CAGCTTAATAGAGCAAGCTCCAATACCTCAGGACGGACTTACCGTGGCACCTCACAGAGCTCAGCGAGAA
GCTGTACACATTGAGAAGATAATGTTGAAAGGAGTCCAGAGAAAAAGAGCTGACAAATACTGGGAGTACA
CTTTCAAAGTAAATTGGTCTGATCTTTCAGTCACAACAGTAACAAAAACCCACCAAGAACTACAGGAATT
TCTACTGAAGCTTCCAAAGGAACTGTCTTCAGAGACTTTTGACAAGACCATCTTAAGAGCCCTGAATCAG
GGTTCCTTGAAAAGGGAGGAACGGCGACATCCTGACCTAGAGCCCATCCTAAGGCAGCTATTTTCAAGTT
CATCACAAGCTTTTCTACAAAGTCAGAAAGTACACAGCTTCTTTCAGTCCATATCATCAGACTCCCTACA
CAGTATCAATAACTTACAATCCTCTCTGAAGACTTCTAAGATATTAGAACACTTAAAAGAAGACAGCTCT
GAAGCTTCAAGTCAAGAAGAAGATGTGTTGCAGCATGCCATAATCCACAAGAAGCATACTGGGAAAAGTC
CCATTGTGAACAATATTGGTACAAGTTGTTCTCCATTGGATGGGCTTACCATGCAATATTCTGAACAGAA
TGGAATTGTGGATTGGAGGAAGCAAAGCTGTACCACCATTCAACACCCAGAGCACTGTGTGACCTCGGCT
GACCAGCATTCTGCTGAAAAACGGAGTTTATCTTCAATAAATAAGAAGAAAGGAAAGCCACAAACAGAAA
AGGAGAAAATTAAGAAAACTGACAACAGATTGAATAGTAGAATAAATGGTATTAGACTCTCCACTCCTCA
GCATGCCCATGGTGGTACTGTGAAAGATGTGAATTTGGACATTGGCTCTGGACATGACACATGTGGAGAA
ACATCTTCAGAGAGTTACAGTTCTCCATCTAGTCCCCGACATGATGGAAGAGAAAGTTTTGAAAGTGAAG
AAGAGAAAGACAGAGACACAGACAGCAATTCTGAGGATTCTGGGAATCCATCAACAACTAGGTTTACAGG
TTACGGTTCTGTCAACCAGACTGTCACTGTCAAGCCACCTGTTCAAATTGCTTCACTAGGAAATGAGAAT
GGAAACCTTTTAGAAGATCCCTTAAACTCACCCAAGTATCAGCATATTTCTTTTATGCCAACGTTACACT
GTGTCATGCACAATGGTGCCCAGAAGTCTGAAGTTGTCGTTCCTGCACCCAAACCCGCTGATGGCAAAAC
CATAGGGATGCTTGTTCCTAGTCCTGTTGCTATTTCTGCAATAAGGGAGTCTGCAAATTCAACCCCTGTT
GGAATACTAGGGCCAACAGCTTGCACTGGAGAATCGGAAAAGCACCTTGAGTTACTGGCTTCCCCTTTAC
CTATTCCATCAACCTTCCTTCCACACAGTAGTACTCCCGCTTTGCATCTTACAGTTCAGAGGCTAAAGTT
GCCACCACCACAGGGATCTTCTGAGAGCTGCACAGTTAACATCCCACAACAACCACCCGGAAGCCTGAGC
ATCGCATCACCAAACACTGCCTTTATTCCTATCCATAACCCAGGTAGTTTCCCAGGCTCTCCTGTTGCTA
CCACGGACCCCATCACAAAATCTGCATCCCAAGTGGTAGGACTCAATCAAATGGTGCCTCAAATTGAGGG
AAACACAGGGACAGTCCCTCAGCCTACCAATGTGAAGGTAGTTCTTCCAGCAGCTGGCCTCTCAGCTGCT
CAGCCACCAGCTTCCTACCCCTTACCAGGCTCTCCCCTTGCTGCCGGCGTGTTACCCAGCCAGAACTCCA
GTGTGCTCAGCACAGCAGCAACTTCTCCCCAGCCAGCGAGCGCAGGTATCAGCCAGGCCCAGGCAACTGT
TCCTCCTGCAGTTCCTACCCACACCCCAGGCCCTGCCCCGAGCCCAAGCCCTGCCTTGACACACAGTACC
GCGCAGAGTGACAGCACCTCTTACATCAGTGCTGTGGGGAACACGAACGCTAATGGGACAGTAGTGCCAC
CGCAGCAGATGGGCTCAGGTCCTTGTGGTTCTTGTGGGCGAAGGTGCAGCTGTGGGACCAATGGAAACCT
TCAGCTAAATAGTTACTATTATCCTAATCCAATGCCTGGACCAATGTACCGAGTCCCTTCATTCTTTACT
CTGCCATCCATTTGCAATGGCAGCTACCTCAACCAAGCACATCAGAGCAATGGAAACCAACTTCCTTTTT
TTCTGCCTCAGACTCCATATGCAAATGGACTGGTACATGACCCAGTCATGGGGAGCCAAGCCAACTATGG
CATGCAGCAGATGGCAGGATTTGGGAGATTCTATCCTGTATATCCAGCACCTAACGTAGTTGCCAACACC
AGTGGTTCGGGGCCCAAGAAGAATGGGAATGTCTCATGTTACAATTGTGGTGTAAGCGGACACTATGCAC
AGGACTGTAAGCAGTCGTCCATGGAGGCCAATCAACAAGGCACTTACAGACTGAGATACGCACCTCCCCT
CCCCCCTTCTAATGATACGTTGGATTCTGCAGACTGA

Translation (1178 aa):
MLRMKLPLKPTHPAEPPPEAEEPEADARPGAKAPSRRRRDCRPPPPPPPPAGPSRGPLPPPPPPRGLGPP
VAGGAAAGAGMPGGGGGPSAALREQERVYEWFGLVLGSAQRLEFMCGLLDLCNPLELRFLGSCLEDLARK
DYHYLRDSEAKANGLSDPGPLADFREPAVRSRLIVYLALLGSENREAAGRLHRLLPQVDSVLKSLRAARG
EGSRGGAEDERGEDGDGEQDAEKDGSGPEGGIVEPRVGGGLGSRAQEELLLLFTMASLHPAFSFHQRVTL
REHLERLRAALRGGPEDAEVEVEPCKFAGPRAQNNSAHGDYMQNNESSLIEQAPIPQDGLTVAPHRAQRE
AVHIEKIMLKGVQRKRADKYWEYTFKVNWSDLSVTTVTKTHQELQEFLLKLPKELSSETFDKTILRALNQ
GSLKREERRHPDLEPILRQLFSSSSQAFLQSQKVHSFFQSISSDSLHSINNLQSSLKTSKILEHLKEDSS
EASSQEEDVLQHAIIHKKHTGKSPIVNNIGTSCSPLDGLTMQYSEQNGIVDWRKQSCTTIQHPEHCVTSA
DQHSAEKRSLSSINKKKGKPQTEKEKIKKTDNRLNSRINGIRLSTPQHAHGGTVKDVNLDIGSGHDTCGE
TSSESYSSPSSPRHDGRESFESEEEKDRDTDSNSEDSGNPSTTRFTGYGSVNQTVTVKPPVQIASLGNEN
GNLLEDPLNSPKYQHISFMPTLHCVMHNGAQKSEVVVPAPKPADGKTIGMLVPSPVAISAIRESANSTPV
GILGPTACTGESEKHLELLASPLPIPSTFLPHSSTPALHLTVQRLKLPPPQGSSESCTVNIPQQPPGSLS
IASPNTAFIPIHNPGSFPGSPVATTDPITKSASQVVGLNQMVPQIEGNTGTVPQPTNVKVVLPAAGLSAA
QPPASYPLPGSPLAAGVLPSQNSSVLSTAATSPQPASAGISQAQATVPPAVPTHTPGPAPSPSPALTHST
AQSDSTSYISAVGNTNANGTVVPPQQMGSGPCGSCGRRCSCGTNGNLQLNSYYYPNPMPGPMYRVPSFFT
LPSICNGSYLNQAHQSNGNQLPFFLPQTPYANGLVHDPVMGSQANYGMQQMAGFGRFYPVYPAPNVVANT
SGSGPKKNGNVSCYNCGVSGHYAQDCKQSSMEANQQGTYRLRYAPPLPPSNDTLDSAD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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