NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS38056.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38056.1 Public Mus musculus 2 Apbb1ip 23 108 98 CCDS HistoryNCBI Gene:54519Re-query CCDS DB by CCDS ID:38056.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38056.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000014290.14 ENSMUSP00000014290.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000014290.14Link to Ensembl Protein Viewer:ENSMUSP00000014290.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000014290Re-query CCDS DB by Protein ID:ENSMUSP00000014290
Original member Current member NCBI NM_019456.2 NP_062329.2 Accepted alive Link to Nucleotide Sequence:NM_019456.2Link to Protein Sequence:NP_062329.2Re-query CCDS DB by Nucleotide ID:NM_019456Re-query CCDS DB by Protein ID:NP_062329Link to BLAST:NP_062329.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062329.2 670 Q8R5A3 670 100% 0 0

Chromosomal Locations for CCDS 38056.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 22816953 22817024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 22819605 22819692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 22823295 22823596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 22826850 22826927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 22834256 22834415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 22835918 22836039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 22849537 22849623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 22853067 22853210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 22858223 22858333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 22866893 22866991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 22867635 22867749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 22871449 22871561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 22874800 22875321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2013 nt):
ATGGGTGAATCAAATGAAGACATAGACCAGATGTTCAGCACTTTACTGGGGGAGATGGATCTCTTGACCC
AGAGTTTAGGAGTGGACACTCTTCCTCCTCCAGACCCCAACCCACCCCGAGAAGAGTTTAACTACACTGT
GGGGTTTAAGGATTTAAATGAGTCCTTAAATGCACTGGAAGACCAAGATTTAGATGCCCTCATGGCAGAT
CTGGTAGCAGATATAAGTGAAGCCGAACAGAGAACCATCCAGGCTCAGAAAGAGTCCTCTCAGAATCAAG
ATCGTTTTGCACTTCTGAGGGCTTCGGATGGCCAGGGTACAGCCTCAGGAGGTTATGGAGCAAGTGCTGC
TGCTATTGATGTTAGTCACCATGAGGAAGCTTTACCACCTCCACCCGTAGAACCCATGCTAGACCTTCTG
CCTCCTCCTCCTCCTCCTCCTCCTCCTGAACTTCTCTCTAAAGAAGAAGAAGAAGCCAAAGCAAAGGCTG
ATAAAATTAAGTTAGCACTGGAAAAGCTGAAGGAAGCCAAGGTTAAGAAGCTTGTAGTTAAGGTGCACAT
GGATGACAGCAGTACCAAGTCACTGATGGTGGATGAGCGGCAGTTGGCTCGGGATGTTCTGGACAACCTT
TTTGAAAAAACCCATTGTGACTGCAATGTGGACTGGTGCCTTTATGAAATATATCCCGAACTGCAAATTG
AGAGAGTTTTTGAAGACCATGAAAATGTTGTTGAAGTCTTATCAGACTGGACAAGAGACACAGAGAACAA
AGTACTGTTTTTGGAGAAAGAGGAAAGATATGCTGTGTTTAAAAACCCTCAGAATTTCTACTTGGATAAT
AAGGGGAAAAAAGAAAACAAGGAAACCAATGAGAAAATGAACGCTAAAAACAAAGAATACTTACTTGAGG
AAAGCTTCTGCGGCACATCCATCATTGTACCAGAACTTGAAGGAGCTCTTTATTTGAAAGAAGATGGAAA
GAAATCCTGGAAACGGCGCTACTTTCTTCTGAGAGCTTCTGGAATTTATTATGTTCCCAAAGGAAAGACA
AAGACATCCCGCGATCTGGCATGTTTTATACAGTTTGAAAATGTAAACATTTACTATGGGATTCAGTGTA
AAATGAAATACAAAGCACCCACTGACCACTGCTTTGTTTTAAAGCATCCTCAAATTCAGAAGGAATCTCA
ATATATCAAGTATCTCTGCTGTGATGACGCAAGAACTCTCAGTCAATGGGTAATGGGAATAAGGATCGCC
AAGTATGGGAAGACTCTCTATGATAACTATCAGCGGGCTGTGGCAAGAGCTGGACTTGCCTCTCGGTGGA
CAAACCTGGGGACTGTTGGTACACCGATGCCAGCTCAGCCTTCTACAGTTTCCTCAGGACTTAAAACAGG
CACCAGCCAGCCCAATGGTCAGATGCCCCAGGCCATCCCTTCTGCAGGTCCTCCTCTGCAAGAGGCCCAG
ACACAAATTGAAACGACTAAGGATGAAAAGCAAGGCTTGGGTAACCATTCCCCAGGAGCAACCAGGGAGA
ACCACCGTCCTAAGTCCAGCCTGCCACCGCCACCCCCTCCAGTAAGACGGTCTTCAGACACCTGTGGCAG
CCCCGCCTTGCCATCCAAGGTCAAGGGCCCTGGCACCTGCACCTTCCCCCACCCGCCGGAGAACTTCCTG
CCACCTCCACCGCCCCCACCGCCTGAGGAGGACAACAGCGGGCTACTCCCGCCACCCCCGCCCCCGCCCT
ACCTGGAGGAGCCACCAGACTTCGTGCCACCACCCCCACCGCCTGCAGCTGTTGAAGACTCTGCATTGCC
ACCCCCGCCACCACCCCCGCCCTGTCTCTCCCAGGAGATAACTAAGTCATCTCCGTTGCCCCCCAAAAAG
CCCCTAGTCCCCCCCAAGAGGCAAGAGAACCAAGGACTCCCCGGTGCACCAGGGAACAGTGAGCAAGATT
TTATGTCAGACCTCATGAAAGCATTGCAAAAGAAAAGAGGCAATATACCCTAG

Translation (670 aa):
MGESNEDIDQMFSTLLGEMDLLTQSLGVDTLPPPDPNPPREEFNYTVGFKDLNESLNALEDQDLDALMAD
LVADISEAEQRTIQAQKESSQNQDRFALLRASDGQGTASGGYGASAAAIDVSHHEEALPPPPVEPMLDLL
PPPPPPPPPELLSKEEEEAKAKADKIKLALEKLKEAKVKKLVVKVHMDDSSTKSLMVDERQLARDVLDNL
FEKTHCDCNVDWCLYEIYPELQIERVFEDHENVVEVLSDWTRDTENKVLFLEKEERYAVFKNPQNFYLDN
KGKKENKETNEKMNAKNKEYLLEESFCGTSIIVPELEGALYLKEDGKKSWKRRYFLLRASGIYYVPKGKT
KTSRDLACFIQFENVNIYYGIQCKMKYKAPTDHCFVLKHPQIQKESQYIKYLCCDDARTLSQWVMGIRIA
KYGKTLYDNYQRAVARAGLASRWTNLGTVGTPMPAQPSTVSSGLKTGTSQPNGQMPQAIPSAGPPLQEAQ
TQIETTKDEKQGLGNHSPGATRENHRPKSSLPPPPPPVRRSSDTCGSPALPSKVKGPGTCTFPHPPENFL
PPPPPPPPEEDNSGLLPPPPPPPYLEEPPDFVPPPPPPAAVEDSALPPPPPPPPCLSQEITKSSPLPPKK
PLVPPKRQENQGLPGAPGNSEQDFMSDLMKALQKKRGNIP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH