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Report for CCDS12036.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12036.1 Public Homo sapiens 19 POLRMT 24 110 108 CCDS HistoryNCBI Gene:5442Re-query CCDS DB by CCDS ID:12036.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12036.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000588649.7 ENSP00000465759.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000588649.7Link to Ensembl Protein Viewer:ENSP00000465759.2Re-query CCDS DB by Nucleotide ID:ENST00000588649Re-query CCDS DB by Protein ID:ENSP00000465759
Original member Current member NCBI NM_005035.4 NP_005026.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005035.4Link to Protein Sequence:NP_005026.3Re-query CCDS DB by Nucleotide ID:NM_005035Re-query CCDS DB by Protein ID:NP_005026Link to BLAST:NP_005026.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005026.3 1230 O00411 1230 100% 0 0

Chromosomal Locations for CCDS 12036.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 617274 617323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 617419 617480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 617570 617655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 617777 617849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 618488 618586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 618705 618760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 618997 619110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 619210 619296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 619586 619765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 619958 620080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 620365 620487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 621058 621846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 622149 622373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 622582 622752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 622821 622985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 623454 623603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 624719 624905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 625124 625254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 629540 630168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 632834 632938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 633425 633512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3693 nt):
ATGTCGGCACTTTGCTGGGGCCGCGGAGCGGCGGGGCTCAAACGAGCCCTACGGCCTTGCGGCCGCCCGG
GACTCCCCGGCAAAGAAGGGACCGCCGGTGGCGTCTGCGGCCCCAGGAGGAGCTCGTCCGCCAGCCCCCA
GGAGCAAGACCAAGACCGCAGGAAGGACTGGGGCCACGTGGAGCTGCTGGAGGTGCTCCAGGCGCGGGTG
CGGCAGCTGCAGGCTGAGAGCGTGTCGGAGGTGGTGGTGAACAGGGTGGATGTGGCGCGGCTCCCAGAAT
GTGGCAGTGGAGATGGTAGCCTCCAGCCACCCAGGAAGGTCCAGATGGGGGCCAAGGATGCCACCCCGGT
GCCCTGTGGCCGCTGGGCAAAGATACTGGAGAAGGATAAGCGGACCCAGCAGATGCGTATGCAGCGGTTG
AAGGCGAAGCTGCAGATGCCATTCCAGAGCGGGGAGTTCAAGGCGCTGACCAGGCGCCTGCAGGTGGAGC
CCCGGCTCCTGAGCAAGCAGATGGCCGGGTGCCTGGAGGACTGCACGCGCCAGGCCCCCGAGAGCCCCTG
GGAGGAGCAGCTGGCCCGGCTGCTGCAGGAGGCCCCTGGGAAGCTGAGCCTCGATGTGGAGCAGGCCCCG
TCGGGGCAGCACTCGCAGGCCCAGCTCTCAGGTCAGCAGCAGAGGCTCCTGGCCTTCTTCAAGTGCTGCC
TGCTCACTGACCAGCTGCCCCTCGCCCACCACCTGCTGGTCGTCCACCACGGCCAGCGGCAGAAGCGGAA
GCTGCTCACGCTGGACATGTACAACGCCGTGATGCTTGGCTGGGCGCGGCAGGGTGCCTTCAAGGAGCTG
GTATATGTGTTATTCATGGTGAAGGATGCCGGCTTGACTCCGGACCTGCTGTCCTATGCGGCTGCCCTCC
AGTGCATGGGGAGGCAGGACCAGGACGCCGGGACCATCGAAAGGTGTCTGGAACAGATGAGCCAGGAGGG
GCTGAAGCTGCAGGCACTCTTCACCGCCGTTCTGCTGTCTGAGGAGGATCGGGCCACTGTTCTGAAGGCC
GTGCACAAGGTGAAGCCCACCTTCAGCCTCCCGCCGCAGCTGCCGCCCCCGGTCAACACCTCCAAGCTGC
TCAGGGACGTGTATGCCAAGGATGGGCGTGTGTCCTACCCGAAGCTGCACCTGCCCTTGAAGACCCTGCA
GTGCCTCTTTGAGAAGCAGCTCCACATGGAGCTGGCCAGCAGGGTGTGCGTGGTGTCCGTGGAGAAGCCC
ACGTTGCCAAGCAAGGAGGTCAAGCACGCGCGGAAGACCCTGAAGACCCTGCGGGACCAATGGGAGAAAG
CACTGTGCCGGGCGCTGCGGGAGACCAAGAACCGCCTAGAGCGCGAGGTGTACGAGGGCCGGTTCTCACT
TTACCCCTTCCTGTGCCTGCTGGACGAGCGCGAGGTGGTGCGGATGCTCCTGCAGGTCCTGCAGGCGCTG
CCCGCCCAAGGTGAGTCCTTCACCACCCTGGCCCGGGAGCTGAGTGCGCGCACTTTCAGCCGGCACGTGG
TGCAGAGGCAGCGGGTCAGTGGCCAGGTGCAGGCGCTGCAGAACCACTACAGGAAGTACCTCTGCTTGCT
GGCCTCCGACGCCGAGGTGCCCGAGCCCTGCCTGCCGCGGCAGTACTGGGAGGAGCTGGGGGCGCCCGAG
GCCCTGCGGGAGCAGCCCTGGCCCCTGCCAGTGCAGATGGAGCTGGGCAAGCTGCTGGCGGAGATGCTGG
TGCAGGCTACGCAGATGCCATGCAGCCTGGACAAGCCGCATCGTTCCTCTCGGCTTGTCCCCGTGCTCTA
CCACGTGTATTCCTTCCGCAACGTCCAGCAGATCGGCATCCTGAAGCCGCACCCGGCCTACGTGCAGCTG
CTGGAGAAGGCCGCGGAGCCCACGCTGACCTTCGAGGCGGTGGATGTACCCATGCTTTGCCCCCCGCTGC
CCTGGACATCGCCGCACTCTGGTGCTTTCCTGCTCAGCCCCACCAAGCTGATGCGCACGGTGGAAGGCGC
CACGCAGCACCAGGAGCTGCTGGAAACCTGCCCGCCCACCGCGCTGCATGGCGCACTGGACGCCCTCACC
CAACTGGGCAACTGCGCCTGGCGCGTCAACGGGCGCGTGCTGGACCTGGTGCTGCAGCTCTTCCAGGCCA
AGGGCTGCCCCCAGCTAGGCGTGCCGGCCCCGCCCTCCGAGGCGCCCCAGCCGCCCGAGGCCCACCTGCC
GCACAGCGCCGCGCCCGCCCGCAAGGCCGAGCTGCGCCGTGAGCTGGCGCACTGCCAGAAGGTGGCCCGG
GAGATGCACAGCCTGCGGGCGGAGGCGCTGTACCGCCTCTCGCTGGCGCAGCACCTGCGGGACCGCGTCT
TCTGGCTGCCGCACAACATGGACTTCCGCGGCCGCACCTACCCCTGCCCGCCGCACTTCAACCACCTGGG
CAGCGACGTGGCGCGGGCCCTGCTGGAGTTCGCCCAGGGCCGCCCGCTCGGCCCGCACGGCCTGGATTGG
CTCAAGATCCACCTGGTCAATCTCACGGGGTTGAAGAAGCGGGAGCCGCTGCGGAAGCGCCTGGCCTTTG
CGGAGGAGGTGATGGATGACATCCTGGACTCCGCGGACCAACCCTTGACGGGCCGAAAGTGGTGGATGGG
CGCGGAGGAACCCTGGCAGACGCTGGCCTGCTGTATGGAGGTGGCGAACGCTGTGCGCGCCTCCGACCCT
GCCGCCTATGTCTCCCACCTCCCCGTCCATCAGGACGGCTCTTGCAACGGCCTGCAGCATTATGCTGCTC
TGGGCCGCGACAGCGTGGGCGCCGCCTCCGTCAACCTGGAGCCCTCGGATGTGCCGCAGGACGTGTACAG
CGGCGTGGCCGCGCAGGTGGAGGTGTTCCGTAGGCAGGACGCCCAGCGGGGCATGCGGGTGGCACAGGTG
CTGGAAGGTTTCATCACCCGCAAGGTGGTGAAGCAGACGGTGATGACGGTGGTGTACGGGGTCACGCGCT
ATGGCGGGCGCCTGCAGATTGAGAAGCGCCTCCGGGAGCTGAGCGACTTTCCCCAGGAGTTCGTGTGGGA
GGCCTCTCACTATCTCGTACGCCAGGTCTTCAAGAGTCTACAGGAGATGTTCTCGGGGACCCGGGCCATC
CAGCACTGGCTGACCGAGAGTGCCCGCCTCATCTCCCACATGGGCTCTGTGGTGGAGTGGGTCACACCCC
TGGGCGTCCCCGTCATCCAGCCCTATCGCCTGGACTCCAAGGTCAAGCAAATAGGAGGTGGAATTCAGAG
CATCACCTACACCCACAACGGAGACATCAGCCGAAAGCCCAACACACGTAAGCAGAAGAACGGCTTCCCG
CCCAACTTCATCCACTCGCTGGACTCCTCCCACATGATGCTCACCGCCCTGCACTGCTACAGGAAGGGCC
TGACCTTCGTCTCTGTGCACGACTGTTACTGGACTCACGCAGCTGATGTCTCCGTCATGAACCAGGTGTG
CCGGGAGCAGTTTGTCCGCTTGCACAGCGAGCCCATCCTGCAGGACCTGTCCAGATTCCTGGTCAAGCGG
TTCTGCTCTGAGCCCCAGAAGATCTTGGAGGCCAGCCAGCTGAAGGAGACACTGCAGGCGGTGCCCAAGC
CAGGGGCCTTCGACCTGGAGCAGGTGAAGCGTTCCACCTACTTCTTCAGCTGA

Translation (1230 aa):
MSALCWGRGAAGLKRALRPCGRPGLPGKEGTAGGVCGPRRSSSASPQEQDQDRRKDWGHVELLEVLQARV
RQLQAESVSEVVVNRVDVARLPECGSGDGSLQPPRKVQMGAKDATPVPCGRWAKILEKDKRTQQMRMQRL
KAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAP
SGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKEL
VYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKA
VHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKP
TLPSKEVKHARKTLKTLRDQWEKALCRALRETKNRLEREVYEGRFSLYPFLCLLDEREVVRMLLQVLQAL
PAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQNHYRKYLCLLASDAEVPEPCLPRQYWEELGAPE
ALREQPWPLPVQMELGKLLAEMLVQATQMPCSLDKPHRSSRLVPVLYHVYSFRNVQQIGILKPHPAYVQL
LEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGATQHQELLETCPPTALHGALDALT
QLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEAPQPPEAHLPHSAAPARKAELRRELAHCQKVAR
EMHSLRAEALYRLSLAQHLRDRVFWLPHNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLDW
LKIHLVNLTGLKKREPLRKRLAFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDP
AAYVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRGMRVAQV
LEGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEFVWEASHYLVRQVFKSLQEMFSGTRAI
QHWLTESARLISHMGSVVEWVTPLGVPVIQPYRLDSKVKQIGGGIQSITYTHNGDISRKPNTRKQKNGFP
PNFIHSLDSSHMMLTALHCYRKGLTFVSVHDCYWTHAADVSVMNQVCREQFVRLHSEPILQDLSRFLVKR
FCSEPQKILEASQLKETLQAVPKPGAFDLEQVKRSTYFFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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