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Report for CCDS20137.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20137.1 Public Mus musculus 6 Skap2 23 108 98 CCDS HistoryNCBI Gene:54353Re-query CCDS DB by CCDS ID:20137.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20137.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000204778.2 ENSMUSP00000145462.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000204778.2Link to Ensembl Protein Viewer:ENSMUSP00000145462.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000204778Re-query CCDS DB by Protein ID:ENSMUSP00000145462
Original member Current member NCBI NM_018773.2 NP_061243.1 Accepted alive Link to Nucleotide Sequence:NM_018773.2Link to Protein Sequence:NP_061243.1Re-query CCDS DB by Nucleotide ID:NM_018773Re-query CCDS DB by Protein ID:NP_061243Link to BLAST:NP_061243.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061243.1 358 Q3UND0-1 358 100% 0 0

Chromosomal Locations for CCDS 20137.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 51860007 51860099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 51874475 51874587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 51879771 51879848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 51907887 51908021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 51908369 51908432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 51909300 51909424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 51921280 51921363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 51922263 51922340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 51996017 51996124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52003081 52003106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52003650 52003755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52012335 52012401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1077 nt):
ATGCCCAACCCCAGCTGTACCTCTTCTCCCGGCCCTCTCCCTGAGGAAATTAGGAACCTGTTGGCAGATG
TTGAAACATTTGTGGCAGACACACTGAAAGGAGAAAATTTATCCAAGAAAGCCAAGGAAAAGAGAGAATC
TCTCATTAAGAAGATAAAAGATGTAAAGTCTGTCTATCTTCAGGAATTTCAAGACAAAGGTGATGCTGAG
GACGGCGATGAATATGACGATCCCTTTGCTGGGCCTGCAGACACGATTTCCTTAGCCTCAGAGCGCTACG
ATAAAGATGATGATGGCCCCTCTGATGGAAACCAGTTTCCTCCCATTGCAGCCCAGGACCTTCCTTTTGT
CATAAAGGCTGGCTACCTGGAAAAACGCAGAAAAGATCACAGCTTTCTGGGGTTTGAATGGCAGAAACGG
TGGTGTGCGCTCAGCAAAACAGTGTTCTATTATTACGGGAGCGATAAAGACAAGCAACAGAAAGGTGAAT
TTGCAATAGATGGCTATGATGTCAGAATGAACAACACCCTTAGGAAGGATGGAAAGAAAGATTGCTGTTT
TGAAATCTGTGCTCCCGACAAACGTATCTATCAGTTTACAGCAGCCTCTCCCAAAGATGCTGAGGAATGG
GTCCAGCAGCTGAAATTTATACTACAAGACCTGGGATCCGACGTTATTCCTGAGGATGATGAGGAAAGAG
GAGAATTATATGATGACGTTGACCATCCTGCTGCCGTCAGCAGCCCGCAGAGGAGCCAGCCAATCGATGA
TGAGATTTATGAGGAGCTCCCAGAGGAGGAAGAGGACACTGCTTCAGTGAAGATGGACGAGCAAGGGAAG
GGAAGTCGGGACAGTGTGCATCACACCTCAGGAGATAAAAGCACTGATTACGCTAATTTTTACCAGGGTC
TGTGGGACTGCACTGGAGCTCTGTCTGATGAGTTGTCCTTTAAGCGTGGTGATGTGATTTACATTCTTAG
CAAGGAATACAATAGATATGGCTGGTGGGTAGGAGAGATGAAGGGAGCCATTGGCTTGGTGCCTAAAGCC
TACCTAATGGAGATGTATGATATTTGA

Translation (358 aa):
MPNPSCTSSPGPLPEEIRNLLADVETFVADTLKGENLSKKAKEKRESLIKKIKDVKSVYLQEFQDKGDAE
DGDEYDDPFAGPADTISLASERYDKDDDGPSDGNQFPPIAAQDLPFVIKAGYLEKRRKDHSFLGFEWQKR
WCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEW
VQQLKFILQDLGSDVIPEDDEERGELYDDVDHPAAVSSPQRSQPIDDEIYEELPEEEEDTASVKMDEQGK
GSRDSVHHTSGDKSTDYANFYQGLWDCTGALSDELSFKRGDVIYILSKEYNRYGWWVGEMKGAIGLVPKA
YLMEMYDI


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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