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Report for CCDS37170.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37170.1 Public Mus musculus 15 Atxn10 23 108 98 CCDS HistoryNCBI Gene:54138Re-query CCDS DB by CCDS ID:37170.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37170.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163242.2 ENSMUSP00000132450.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163242.2Link to Ensembl Protein Viewer:ENSMUSP00000132450.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163242Re-query CCDS DB by Protein ID:ENSMUSP00000132450
Original member Current member NCBI NM_016843.4 NP_058539.2 Accepted alive Link to Nucleotide Sequence:NM_016843.4Link to Protein Sequence:NP_058539.2Re-query CCDS DB by Nucleotide ID:NM_016843Re-query CCDS DB by Protein ID:NP_058539Link to BLAST:NP_058539.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058539.2 475 P28658 475 100% 0 0

Chromosomal Locations for CCDS 37170.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 85336465 85336580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 85359454 85359645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 85365277 85365359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 85375322 85375418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 85376544 85376702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 85382904 85382984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 85386991 85387156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 85391638 85391746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 85393337 85393506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 85438102 85438165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 85462280 85462467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 85462921 85462923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1428 nt):
ATGGCGGCGCCCAGGATGCCACCCTCCCGGCTGTCGGGCATCATGGTGCCCGCACCCATCCAGGACCTGG
AGGCCTTGCGCGCGCTCACGGCGCTCTTCAAGGAGCAGCGTAACCGGGAAACAGCACCCAGAACGATCTT
CCAGAGAGTCCTGGATATCTTAAAGAAGTCTACTCATGCTGTTGAGCTGGCCTGCAGGGATCCCTCCCAA
GTGGAACATCTGGCTTCCAGTCTGCAGCTAATCACTGAATGCTTCAGATGTCTTCGGAATGCTTGTATAG
AGTGTTCTGTGAATCAGAATTCCATCAGGAACCTGGATACGATCGGAGTTGCTGTTGATTTGGTTCTTCT
CTTTCGTGAACTTCGGGTGGAACAAGACTCCTTGTTGACAGCTTTTCGATGTGGCCTGCAGTTTTTAGGC
AACGTTGCCTCACGAAATGAAGAATCCCAGTCCATTGTTTGGGTCCACGCCTTCCCAGAACTCTTCATGT
CTTGCTTGAACCATCCAGACAAAAAGATTGTTGCCTACTGTTCCATGATTCTGTTCACATCTCTTAATGC
TGAAAGGATGAAAGACCTGGAAGAGAACCTCAATATTGCAATTAACGTCATAGAAGCTCACCAAAAGCAC
CCGGCGTCAGAGTGGCCGTTCTTGATTATTTCAGACCACTTTCTGAAAAGCCCGGAACTGGTGGAAGCTA
TGTATGGCAAACTCAGCAACCAGGAAAGGATCACACTGTTAGACATAGTGATAGCCAAGCTAGTGGGTGA
GGAGCAGCTGACAAAGGATGACATCTCTATCTTTGTGCGCCATGCCGAGTTGATTGCAAACTCATTTATG
GATCAGTGCAGGAACGTGCTGAAGTTGACCTCAGAGCCTCACACCGAGGATAAGGAAGCCCTGGTTACGA
TTCGGCTCCTGGATGTCTTGTGTGAAATGACGTCCAACACTGAGCTTCTCGGCTACCTGCAGGTTTTCCC
TGGCCTGATGGAACGCGTGATTGATGTTTTACGAGTGATTCATGAAGTTGGAAAAGAAAGCACGAACATC
TTCAGTCCCTCAGACTCTCTAAAAGCAGAGGGTGACATCGAACACATGACTGAAGGCTTTAAGTCTCATC
TCATCCGTCTGATTGGAAATCTGTGCTACAAGAATAAAGAAAACCAAGACAAAGTGAATGAGCTGGATGG
CATTCCTCTGATCCTGGACAGCAGCAACATCGATGACAACAACCCCTTTATGATGCAGTGGGTGGTGTAT
GCTGTGCGAAATCTCACTGAAGACAACAGCCAAAACCAAGATGTCATTGCCAAGATGGAGGAGCAGGGCT
TGGCAGACGCATCCCTACTGAAGAAAATGGGCTTTGAAATTGAAAAGAGTGGGGATAAACTGATTCTGAA
GTCTAATAATGACATCCCCCCGCCTTGA

Translation (475 aa):
MAAPRMPPSRLSGIMVPAPIQDLEALRALTALFKEQRNRETAPRTIFQRVLDILKKSTHAVELACRDPSQ
VEHLASSLQLITECFRCLRNACIECSVNQNSIRNLDTIGVAVDLVLLFRELRVEQDSLLTAFRCGLQFLG
NVASRNEESQSIVWVHAFPELFMSCLNHPDKKIVAYCSMILFTSLNAERMKDLEENLNIAINVIEAHQKH
PASEWPFLIISDHFLKSPELVEAMYGKLSNQERITLLDIVIAKLVGEEQLTKDDISIFVRHAELIANSFM
DQCRNVLKLTSEPHTEDKEALVTIRLLDVLCEMTSNTELLGYLQVFPGLMERVIDVLRVIHEVGKESTNI
FSPSDSLKAEGDIEHMTEGFKSHLIRLIGNLCYKNKENQDKVNELDGIPLILDSSNIDDNNPFMMQWVVY
AVRNLTEDNSQNQDVIAKMEEQGLADASLLKKMGFEIEKSGDKLILKSNNDIPPP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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