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Report for CCDS53180.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53180.1 Public Mus musculus X Diaph2 23 108 98 CCDS HistoryNCBI Gene:54004Re-query CCDS DB by CCDS ID:53180.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53180.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037854.14 ENSMUSP00000039334.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037854.14Link to Ensembl Protein Viewer:ENSMUSP00000039334.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000037854Re-query CCDS DB by Protein ID:ENSMUSP00000039334
Original member NCBI NM_172493.2 NP_766081.1 Updated not alive Link to Nucleotide Sequence:NM_172493.2Link to Protein Sequence:NP_766081.1Re-query CCDS DB by Nucleotide ID:NM_172493Re-query CCDS DB by Protein ID:NP_766081
Current member NCBI NM_172493.3 NP_766081.1 Accepted alive Link to Nucleotide Sequence:NM_172493.3Link to Protein Sequence:NP_766081.1Re-query CCDS DB by Nucleotide ID:NM_172493Re-query CCDS DB by Protein ID:NP_766081Link to BLAST:NP_766081.1

Chromosomal Locations for CCDS 53180.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 129749976 129750116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129801395 129801427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129804013 129804189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129821239 129821343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129902900 129903039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129939245 129939319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129939403 129939472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129942899 129943035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129943843 129943951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129952673 129952783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129955894 129956012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129957243 129957359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129960044 129960162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129962920 129962984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129966526 129966630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129971279 129971593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 129972495 129972609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 130047325 130047426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 130050367 130050461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 130073822 130073923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 130088527 130088766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 130109252 130109381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 130178936 130179060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 130259077 130259241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 130289854 130289989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 130327966 130328061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 130460871 130460935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3309 nt):
ATGGAGGAGCTCGGGGCGGCGGCGTCGGGAGCCGGAGGCGGCGGCGGTGGCGGCGAGGAACACGGCGGGG
GC
CGGAGCAACAAGCGAGGCGCGGGGAACCGGGCCGCCAACGAAGAGGAGACGAGAAACAAACCCAAACT
G
AACATTCAAATAAAAACTTTGGCAGATGATGTGCGTGACCGAATTACAAGTTTCAGAAAATCTGCCACC
AAG
AGAGAAAAGCCTGTTATTCAACATTCTATTGATTATCAAACTGCAGTGGTTGAGATTCCCCCAGCTC
TG
ATAGTACATGATGACCGATCTTTGATTTTGTCTGAAAAGGAAGTTCTGGACCTCTTTGAGAAAATGAT
G
GAAGATATGAACCTTAATGAAGAAAAGAAAGCTCCTTTGCGAAAGAAGGATTTTAGCATCAAGCGTGAG
ATG
GTTGTCCAGTATATTTCTGCTACTTCCAAATCTGGTGGCCTGAAAAACAGCAAACATGAGTTCACCC
TT
TCTTCACAAGAATATGTTCATGAATTACGATCTGGCATCTCAGATGAGAAACTTCTCAACTGCCTGGA
A
TCTTTGAGAGTGTCTTTAACCAGCCATCCTGTCAGCTGGGTCAACAACTTTGGCTATGAAGGACTTGGA
GTC
TTACTGGATGTGCTGGAGAAGCTTCTGGACAAAAAACAGCAAGAAAATATCGACAAGAAGAATCAGT
AC
AAAGTCATTCAGTGCCTGAAAGCATTTATGAATAATAAGTTTGGACTACAAAGAATTCTAGGAGACGA
G
AGAAGCCTTTTACTGTTGGCAAGAGCAATTGACCCGAAACAACAGAATATGATGACTGAAATAGTAAAA
ATC
CTTTCTGCTATTTGCATTGTTGGGGAAGAAAACATTCTAGACAAACTTTTAGGGGGCATCACTGCTG
CA
GCTGAACTAAATAATAGAGAACGATTTTCACCAATTGTGGAAGGCTTAGAAAATAATGAAGCCTTGCA
T
CTCCAGGTGGCCTGCATGCAGTTCATAAATGCACTTGTCACCTCTCCATATGATCTTGATTTTCGAATT
CAT
TTGAGGAATGAATTCCTTCGTTGTGGATTAAAAGCAATGCTCCCTACTCTTAAAGAGATAGAGAATG
AA
GGGCTTGATATTCAGTTGAGAGTGTTTGAAGAGAACAAAGAAGATGACCTAAGTGAATTATCCCACCG
T
CTCAATGACATTCGAGCTGAAATGGATGATATTAATGAAGTCTACCATCTGCTGTATAATATGCTGAAG
GAC
ACTGCTGCGGAACCTTACTTATTATCCATTCTCCAACACTTTCTGCTCATCAGAAATGATTACTACA
TC
AGGCCACAGTATTATAAAATCATTGAGGAGTGTGTTTCACAGATAGTGCTACACTGCAGTGGCATGGA
C
CCAGACTTCAAGTACCGGCAGCGCATAGACTTTGATTTCACTCATCTCCTAGATGCTTGTGTAAATAAG
GCA
AAAGTTGAAGAAAATGAGCAAAAAGCAATGGAATTTTCAAAGAAGTTCGATGAAGAATTCACAGCTC
GT
CAGGAAGCTCAAGCAGAGCTTCAGAAAAGAGATGAAAAAATCAAAGAACTGGAAACAGAAATCCAGCA
G
CTTCGAGGACAGGGAGTTCCATCTGCAATTCCAGGTCCACCTCCACCACCTCCACTGCCAGGTGCAGGA
CCA
TGCCCACCACCACCACCTCCTCCTCCTCCACCACCTCCACTTCCAGGAGTCGTCCCTCCTCCTCCTC
CA
CCATTACCTGGGATGCCTGGTATTCCACCACCACCTCCACCACCTTTGTCTGGAGTACCTCCTCCACC
A
CCACCCCCTGGGGGAGTTTTTCCTCTCCTATCAGGACCAATTGAGCTACCATATGGAATGAAGCAGAAA
AAA
TTATATAAGCCTGACATACCTATGAAAAGAATCAACTGGTCCAAGATTGAGCCTAAAGAATTATCCG
AA
AACTGTGTTTGGCTAAAACTTAAAGAAGAGAAGTATGAGAATGCAGATCTATTTGCAAAACTGGCCTT
G
ACATTTCCTTCCCAGATGAAAGGTCAAAGGAATACAGAGGCTGCAGAAGAAAATAGGAGTGGGCCTCCA
AAG
AAGAAAGTGAAGGAATTGAGAATTTTGGATACCAAAACAGCCCAGAATCTATCTATCTTCCTTGGAT
CT
TACCGCATGCCATACGAGGAAATAAAGAACATTATTTTGGAGGTTAATGAAGAGATGCTCAGTGAGGC
C
CTAATCCAGAATCTTGTAAAATATCTTCCTGACCAGAACGCACTCCGAGAACTAGCCCAGCTTAAGAGT
GAA
TATGATGATCTCTGTGAGCCTGAGCAGTTTGGTGTTGTGATGAGCACGGTGAAAATGTTACGTCCTC
GT
CTCACGAGCATCCTTTTCAAACTCACCTTTGAAGAACATGTCAACAACATCAAACCAAGCATCATAGC
A
GTAACTCTTGCATGTGAAGAACTGAAGAAAAGTGAAAGCTTTAAGAGACTCTTAGAGTTGATTCTTCTG
GTT
GGAAACTACATGAACTCAGGCTCCAGGAATGCCCAGTCTCTAGGTTTTAAGATTAACTTTCTGTGTA
AG
ATCAAAGACACAAAATCAGCAGATCAAAAATCCACCCTTTTGCATTTTCTTGCTGAAATCTGTGATGA
G
AAATACCGGGATATCCTGAAATTTCCTGATGAGCTGGAGCATGTGGAAAGCGCAGGCAAAGTTTCAGCT
CAA
ATACTCAAGAGCAACCTTGTAGCAATGGAACAAAGCATTCTTCATCTGGAGAAAAACATCAAGAATT
TC
CCACCAGCAGAATCGCACCATGATAAGTTTGTGGAAAAGATGATGAGCTTTACCCAGAATGCCAGAGA
A
CAGTATGACAAACTGTCCACCATGCACAGCAATATGTTGAAGCTCTATGAGAGTCTGGGAGAATACTTC
ATT
TTTGACCCGAACACAGTAAACATGGAAGAATTTTTTGGTGATCTCAACACCTTCAGAACCCTATTTT
TG
GAAGCACTGAAAGAAAACCACAAGAGAAAGGAAATGGAAGAGAAGAGCAGGAGAGCAAAGCTTGCAAA
A
GAGAAAGCGGAACAAGAGAAGCTGGAACGCCAGAAGAAGAAGAAGCAACTCATTGACATAAACAAAGAG
GGT
GATGAGACGGGAGTGATGGATAATCTTCTGGAAGCCCTACAGTCAGGTGCAGCATTCAGAGACCGCA
GA
AAGCGAATTCCAAGAAATCCAGATAACAGACGGCCCCCTCTGGAAAGATCTCGCTCTCGCCACAATGG
A
GCCATGTCATCCAAGTGA


Translation (1102 aa):
MEELGAAASGAGGGGGGGEEHGGGRSNKRGAGNRAANEEETRNKPKLNIQIKTLADDVRDRITSFRKSAT
K
REKPVIQHSIDYQTAVVEIPPALIVHDDRSLILSEKEVLDLFEKMM
EDMNLNEEKKAPLRKKDFSIKRE
M
VVQYISATSKS
GGLKNSKHEFTLSSQEYVHELRSGISDEKLLNCLESLRVSLTSHPVSWVNNFGYEGLG
V
LLDVLEKLLDKK
QQENIDKKNQYKVIQCLKAFMNNKFGLQRILGDERSLLLLARAIDPKQQNMMTEIVK
I
LSAICIVGEEN
ILDKLLGGITAAAELNNRERFSPIVEGLENNEALHLQVACMQFINALVTSPYDLDFRI
H
LRNEFLRCGLKAMLP
TLKEIENEGLDIQLRVFEENKEDDLSELSHRLNDIRAEMDDINEVYHLLYNMLK
D
TAAEPYLLSILQHFLLIRNDYYI
RPQYYKIIEECVSQIVLHCSGMDPDFKYRQRIDFDFTHLLDACVNK
A
KVEENEQKAMEFSKK
FDEEFTARQEAQAELQKRDEKIKELETEIQQLRGQGVPSAIPGPPPPPPLPGAG
P
CPPPPPPPPPPPPLPGVVPPPPPPLPGMPGIPPPPPPPLSGVPPPPPPPGGVFPLLSGPIELPYGMKQK
K
LYKPDIPMKRINWSK
IEPKELSENCVWLKLKEEKYENADLFAKLALTFPSQMKGQRNTEAAEENRSGPP
K
KKVKELRILDTKTAQNL
SIFLGSYRMPYEEIKNIILEVNEEMLSEALIQNLVKYLPDQNALRELAQLKS
E
YDDLCEPEQFGVV
MSTVKMLRPRLTSILFKLTFEEHVNNIKPSIIAVTLACEELKKSESFKRLLELILL
V
GNYMNSGSRNAQSLGFKINFLCK
IKDTKSADQKSTLLHFLAEICDEKYRDILKFPDELEHVESAGKVSA
Q
ILKSNLVAMEQSILHLEKNIKNFPPAESHHDKFVEKMM
SFTQNAREQYDKLSTMHSNMLKLYESLGEYF
I
FDPNTVNMEEFFGDLNTFRTLFL
EALKENHKRKEMEEKSRRAKLAKEKAEQEKLERQKKKKQLIDINKE
G
DETGVMDNLLEALQSGAAFRDRRKRIPRNP
DNRRPPLERSRSRHNGAMSSK



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser