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Report for CCDS38581.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38581.1 Public Mus musculus 3 Ddx20 23 108 98 CCDS HistoryNCBI Gene:53975Re-query CCDS DB by CCDS ID:38581.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38581.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090680.10 ENSMUSP00000088176.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090680.10Link to Ensembl Protein Viewer:ENSMUSP00000088176.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000090680Re-query CCDS DB by Protein ID:ENSMUSP00000088176
Original member Current member NCBI NM_017397.3 NP_059093.3 Accepted alive Link to Nucleotide Sequence:NM_017397.3Link to Protein Sequence:NP_059093.3Re-query CCDS DB by Nucleotide ID:NM_017397Re-query CCDS DB by Protein ID:NP_059093Link to BLAST:NP_059093.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_059093.3 825 Q9JJY4 825 100% 0 0

Chromosomal Locations for CCDS 38581.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 105678550 105679712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 105680344 105680445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 105680550 105680655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 105680981 105681063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 105682726 105682784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 105682877 105683015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 105683153 105683295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 105683416 105683530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 105684285 105684453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 105686639 105686733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 105687124 105687427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2478 nt):
ATGGCGGCGGCGGCGTTTGAAGTCCCGGCGGCCTTGACAACCTCCGAGTCCACTATGGCTGCGGAGCGTG
CGGCCGCGCCGGTGCAGGCTGTGGAGCCGACTCCGGCATCCCCGTGGACCCAGCGGACCGCACACGACAT
CGGCGGGCCGCGCACACGTACCGGGGACGTGGTGCTGGCGGAGCCCGCGGACTTCGAGTCGCTGCTGCTG
TCGCGACCGGTGCTGGAGGGTCTGCGGGCGGCCGGCTTCGAGAGACCCTCTCCGGTGCAGCTCAAGGCCA
TCCCGTTGGGGCGCTGCGGGCTCGATTTAATTGTCCAAGCTAAGTCGGGCACTGGAAAAACTTGTGTATT
CTCCACCATTGCTCTGGACTCTCTGATTCTTGAAAACTATAGTACTCAGATTTTGATATTGGCTCCCACA
AGAGAAATTGCTGTTCAGATACACTCGGTTATCACAGCCATTGGAATAAAAATGGAAGGATTAGAATGTC
ATGTCTTTATTGGAGGGACTCCATTATCACAAGACAAAACCAGACTTAAAAAGTGTCATATTGCTGTTGG
ATCTCCTGGTAGAATTAAACAGCTCATAGAACTTGACTACCTGAATCCGGGCAGTATCCGTCTCTTTATT
CTTGATGAAGCAGATAAGCTTTTAGAAGAAGGCAGTTTCCAGGAGCAAATAAATTGGATTTACTCCTCTT
TACCTGCGAGTAAGCAGATGTTGGCAGTATCTGCTACTTACCCTGAAGTTTTGGCTAATGCTTTGACAAG
GTATATGAGAGATCCCACTTTTGTAAGATTGAATCCCAGCGATCCAAGTCTCATAGGTTTGAAGCAGTAC
TACCAAGTTGTCAATTCTTACCCTTTGGCTCATAAGATTTTTGAGGAAAAGACTCAGCACTTACAGGAAC
TTTTTAGTAAAGTCCCATTTAATCAAGCCTTGGTGTTTTCTAATTTGCACAGCAGAGCTCAACATTTGGC
TGATATCCTTTCTTCTAAAGGTTTTCCTACTGAATGCATTTCAGGTAACATGAATCAGAATCAGCGCCTT
GATGCTATGGCTAAACTGAAGCAGTTTCATTGCAGAGTCCTCATTTCTACAGACTTGACGTCCCGTGGGA
TTGACGCAGAGAAGGTGAATCTAGTTGTAAATCTCGATGTGCCGTTAGACTGGGAGACTTACATGCATCG
GATTGGCAGAGCTGGCCGTTTTGGTACATTGGGACTGACAGTGACCTACTGTTGTAGAGGAGAAGAAGAA
AATATGATGATGAAAATTGCTCAGAAATGTAATATCAACCTTCTTCCTTTACCAGATCCTATTCCTCCTG
GCCTGATGGAAGAATGCTTGAATTGGGATGTGGAAGTTAAAGCTGCCATGCATACTTACAGCTCACCAAC
TGTAGCTACTCAGTCCCCCAAAAAGCAAGTTCAAAAACTAGAGAGAGCCTTCCAGTCTCAAAGAACGCCT
GGGAACCAAACGCCTTCCCCTAGAAATACTTCTGCATCTGCACTGTCAGCCAGGCCAAAGCACAGCAAAC
CAAAGCTTCCTGTGAAAAGCCACTCAGAGTGTGGAGTCCTAGAAAAGGCAGCTCCACCACAAGAGTCGGG
CTGTCCCGCACAGCTGGAAGAGCAAGTTAAGAATTCTGTTCAGACCTCTGTTGAGGATTCCTCCAGTAAC
AGCCAGCATCAGGCCAAAGATAGCTCACCTGGGTCACTCCCTAAAATCCCTTGTCTGTCTTCTTTTAAAG
TCCATCAGCCGTCTACTTTGACTTTTGCAGAACTGGTAGACGATTATGAGCACTATATTAAAGAGGGGTT
AGAGAAACCTGTGGAAATTATCCGGCACTACACAGGGCCTGAGGCCCAGACCGGGAATCCTCAGAATGGC
TTTGTGAGAAATAGAGTTTCTGAAGATAGAGCACAGATGTTGGTGAGTAGTAGCCAGTCTGGAGACTCAG
AGAGTGACAGCGATTCTTGCAGCTCAAGGACTTCTTCCCAGAGCAAAGGTAATAAGTCTTACTTGGAAGG
CTCCTCAGACACTCAGTTGAAAGACACTGAATGTACTCCTGTGGGTGGCCCTCTCTCTCTGGAACAAGTT
CAGAATGGAAATGATACCCCGACTCAAGTGGAGTATCAAGAAGCCCCTGAAACCCAGGTAAAGGCAAGGC
ATAAAGAAGGCGCTAACCAAAGGTCTAAGCAAAGTCGGAGAAACCCAGCACGGCGTTCTTCTTACCGAGT
ACAGTCAGAACCCCAGGAAGAGAGTTGGTATGACTGTCACAGGGAAACAACTGCAAGTTTTTCTGATACT
TACCAGGATTATGAGGAGTACTGGAGAGCGTATTACAGGGCATGGCAAGAGTATTATGCTGCTGCTTCCC
ATTCATACTATTGGAATGCTCAGAGACATCCAAGCTGGATGGCTGCCTATCATATGAATACAGTTTATCT
ACAAGAGATGATGCGTGGTAACCAATGA

Translation (825 aa):
MAAAAFEVPAALTTSESTMAAERAAAPVQAVEPTPASPWTQRTAHDIGGPRTRTGDVVLAEPADFESLLL
SRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLILENYSTQILILAPT
REIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFI
LDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEVLANALTRYMRDPTFVRLNPSDPSLIGLKQY
YQVVNSYPLAHKIFEEKTQHLQELFSKVPFNQALVFSNLHSRAQHLADILSSKGFPTECISGNMNQNQRL
DAMAKLKQFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIGRAGRFGTLGLTVTYCCRGEEE
NMMMKIAQKCNINLLPLPDPIPPGLMEECLNWDVEVKAAMHTYSSPTVATQSPKKQVQKLERAFQSQRTP
GNQTPSPRNTSASALSARPKHSKPKLPVKSHSECGVLEKAAPPQESGCPAQLEEQVKNSVQTSVEDSSSN
SQHQAKDSSPGSLPKIPCLSSFKVHQPSTLTFAELVDDYEHYIKEGLEKPVEIIRHYTGPEAQTGNPQNG
FVRNRVSEDRAQMLVSSSQSGDSESDSDSCSSRTSSQSKGNKSYLEGSSDTQLKDTECTPVGGPLSLEQV
QNGNDTPTQVEYQEAPETQVKARHKEGANQRSKQSRRNPARRSSYRVQSEPQEESWYDCHRETTASFSDT
YQDYEEYWRAYYRAWQEYYAAASHSYYWNAQRHPSWMAAYHMNTVYLQEMMRGNQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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