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Report for CCDS37383.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37383.1 Public Mus musculus 16 Rwdd2b 23 108 98 CCDS HistoryNCBI Gene:53858Re-query CCDS DB by CCDS ID:37383.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 37383.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039101.11 ENSMUSP00000049168.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039101.11Link to Ensembl Protein Viewer:ENSMUSP00000049168.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000039101Re-query CCDS DB by Protein ID:ENSMUSP00000049168
Original member Current member NCBI NM_016924.2 NP_058620.2 Accepted alive Link to Nucleotide Sequence:NM_016924.2Link to Protein Sequence:NP_058620.2Re-query CCDS DB by Nucleotide ID:NM_016924Re-query CCDS DB by Protein ID:NP_058620Link to BLAST:NP_058620.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058620.2 290 Q99M03 290 100% 0 0

Chromosomal Locations for CCDS 37383.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 87434392 87434626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87436573 87436935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87437064 87437131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87437294 87437500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (873 nt):
ATGGTTGAGATGGAGCAGGCTGAGGCCCAGCTCTCCGAGTTGGACCTCCTGGCCAGTATGTTCCCCAGTG
AGAATGAGCTCATAGTGAATGACCAGCTGGCATTGGCGGAGCTGAAAGATTGTATTGAGAAGAGGACAAT
GGAGGGGCGATCATCGCAAGTGTACTTTACGATCAATGTGAGCCTGGACCTCTCTGAGGCAGCAGTGGTG
ACGTTTTCTTTGTCTTGCATTCTTCCCTTTAAATATCCTACAGTCCTGCCCGAAATTACAGTGAGATCAG
TATCGCTGAGTAGATCCCAGCAGACTCAGCTGAACACAGATCTGATAGCATACCTGCAGAAGAACTGTCT
TGGAGATGTCTGTATCCTGAATGCCACAGAGTGGGTTAAAGAGCATGCCTTTGACTATGTCAACATAGAA
GCTTTGCCCTCCCCCGCCAGGCAAAGCACAGCCCAGCCAGAGGATCTCGCTTTCACGAGGCTCTGGATCT
ACAGCCATCACATCTACAACAAGTGCAAAAGAAGAAACATCCTAGAGTGGGCAAAGGAATTGTCCCTGAC
TGGGTTTAGCATGCCTGGGAAACCTGGTGTTGTTTGTGTGGAAGGCCCGCAAAGTGCTTGTGAGGAATTC
TGGTCAAGACTCAGAAAACTAAACTGGAAGAGGATTTTAATTCGTCATCGAGAAGACATTCCTCTTGACG
GTACAGCCGGCGGAATGGAAGGACAGCGGAAATTTCCCATTCTTGAAGAAAAGGCCTTCAGTGTCCACGG
AGCCAGAGGAAACCACATGGACTTTGGCCAGCTGTATCAGTTCTTAAATGCCAGGGGATGTGGGGATGTT
TTCCAGATGTTCTTTGGTGTAGAAGGACAGTGA

Translation (290 aa):
MVEMEQAEAQLSELDLLASMFPSENELIVNDQLALAELKDCIEKRTMEGRSSQVYFTINVSLDLSEAAVV
TFSLSCILPFKYPTVLPEITVRSVSLSRSQQTQLNTDLIAYLQKNCLGDVCILNATEWVKEHAFDYVNIE
ALPSPARQSTAQPEDLAFTRLWIYSHHIYNKCKRRNILEWAKELSLTGFSMPGKPGVVCVEGPQSACEEF
WSRLRKLNWKRILIRHREDIPLDGTAGGMEGQRKFPILEEKAFSVHGARGNHMDFGQLYQFLNARGCGDV
FQMFFGVEGQ


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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