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Report for CCDS36058.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36058.1 Public Mus musculus 10 Nap1l1 23 108 98 CCDS HistoryNCBI Gene:53605Re-query CCDS DB by CCDS ID:36058.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36058.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065917.15 ENSMUSP00000070068.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065917.15Link to Ensembl Protein Viewer:ENSMUSP00000070068.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000065917Re-query CCDS DB by Protein ID:ENSMUSP00000070068
Original member Current member EBI ENSMUST00000217908.1 ENSMUSP00000151750.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217908.1Link to Ensembl Protein Viewer:ENSMUSP00000151750.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217908Re-query CCDS DB by Protein ID:ENSMUSP00000151750
Original member Current member EBI ENSMUST00000218828.1 ENSMUSP00000151972.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000218828.1Link to Ensembl Protein Viewer:ENSMUSP00000151972.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000218828Re-query CCDS DB by Protein ID:ENSMUSP00000151972
Original member Current member NCBI NM_015781.5 NP_056596.1 Accepted alive Link to Nucleotide Sequence:NM_015781.5Link to Protein Sequence:NP_056596.1Re-query CCDS DB by Nucleotide ID:NM_015781Re-query CCDS DB by Protein ID:NP_056596Link to BLAST:NP_056596.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056596.1 391 P28656 391 100% 0 0

Chromosomal Locations for CCDS 36058.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 111481300 111481316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111485499 111485584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111486644 111486746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111490028 111490169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111490377 111490457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111491009 111491137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111492087 111492158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111492842 111492981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111493297 111493442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111493550 111493569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111494171 111494293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111494795 111494824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111495325 111495375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111496040 111496075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1176 nt):
ATGGCCGACATTGACAACAAAGAACAGTCTGAACTTGATCAAGATTTGGAAGATGTTGAAGAAGTAGAAG
AAGAAGAAACGGGTGAAGAAACAAAAATCAAAGCACGTCAGCTAACTGTTCAGATGATGCAAAATCCTCA
GATTCTTGCAGCTCTTCAGGAAAGACTTGATGGTCTGGTAGACACACCAACAGGATACATTGAAAGCTTG
CCTAAGGTAGTCAAAAGACGAGTGAATGCTCTCAAGAATCTTCAGGTTAAATGTGCACAGATAGAAGCCA
AATTCTATGAGGAAGTTCATGATCTCGAGAGGAAGTATGCTGTTCTCTATCAGCCTTTATTTGATAAGCG
ATTTGAGATCATTAATGCAATCTATGAACCTACAGAAGAAGAATGCGAGTGGAAACCAGATGAGGAGGAT
GAAGTTTCGGAGGAGCTGAAAGAAAAGGCCAAGATTGAAGATGAGAAAAAGGATGAAGAAAAAGAAGACC
CGAAAGGAATTCCTGAATTTTGGTTGACAGTGTTTAAGAATGTTGACTTGCTCAGTGACATGGTTCAGGA
ACATGATGAACCTATTCTGAAGCACTTGAAAGATATTAAAGTGAAGTTTTCGGATGCTGGCCAGCCTATG
AGTTTTGTCTTAGAATTTCACTTTGAACCCAATGACTATTTCACAAATGAAGTGTTAACAAAGACTTACA
GGATGCGGTCAGAGCCAGATGATTCTGACCCCTTTTCTTTTGACGGACCAGAGATTATGGGCTGTACAGG
GTGCCAGATAGATTGGAAAAAAGGAAAGAATGTTACTTTGAAAACCATTAAGAAGAAGCAGAAACACAAG
GGGCGTGGGACAGTTCGTACTGTGACTAAAACAGTTTCCAATGATTCTTTCTTTAATTTTTTTGCTCCTC
CTGAAGTTCCTGAGAATGGCGATCTGGATGATGATGCTGAGGCGATACTGGCTGCAGACTTTGAAATTGG
TCACTTTTTACGTGAGCGCATAATCCCAAGATCAGTGCTGTACTTCACTGGAGAGGCTATCGAGGACGAT
GACGATGATTATGATGAAGAAGGTGAAGAAGCTGACGAGGAAGGGGAAGAAGAAGGAGATGAGGAAAACG
ATCCAGACTATGACCCAAAGAAGGATCAGAACCCAGCCGAGTGCAAGCAGCAGTGA

Translation (391 aa):
MADIDNKEQSELDQDLEDVEEVEEEETGEETKIKARQLTVQMMQNPQILAALQERLDGLVDTPTGYIESL
PKVVKRRVNALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEED
EVSEELKEKAKIEDEKKDEEKEDPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSDAGQPM
SFVLEFHFEPNDYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHK
GRGTVRTVTKTVSNDSFFNFFAPPEVPENGDLDDDAEAILAADFEIGHFLRERIIPRSVLYFTGEAIEDD
DDDYDEEGEEADEEGEEEGDEENDPDYDPKKDQNPAECKQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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