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Report for CCDS23749.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23749.1 Public Mus musculus 10 Stx7 23 108 98 CCDS HistoryNCBI Gene:53331Re-query CCDS DB by CCDS ID:23749.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23749.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020174.6 ENSMUSP00000020174.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020174.6Link to Ensembl Protein Viewer:ENSMUSP00000020174.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000020174Re-query CCDS DB by Protein ID:ENSMUSP00000020174
Original member Current member EBI ENSMUST00000220041.1 ENSMUSP00000151638.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000220041.1Link to Ensembl Protein Viewer:ENSMUSP00000151638.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000220041Re-query CCDS DB by Protein ID:ENSMUSP00000151638
Original member NCBI NM_001358563.1 NP_001345492.1 Updated not alive Link to Nucleotide Sequence:NM_001358563.1Link to Protein Sequence:NP_001345492.1Re-query CCDS DB by Nucleotide ID:NM_001358563Re-query CCDS DB by Protein ID:NP_001345492
Current member NCBI NM_001358563.2 NP_001345492.1 Accepted alive Link to Nucleotide Sequence:NM_001358563.2Link to Protein Sequence:NP_001345492.1Re-query CCDS DB by Nucleotide ID:NM_001358563Re-query CCDS DB by Protein ID:NP_001345492Link to BLAST:NP_001345492.1
Original member NCBI NM_016797.5 NP_058077.2 Updated not alive Link to Nucleotide Sequence:NM_016797.5Link to Protein Sequence:NP_058077.2Re-query CCDS DB by Nucleotide ID:NM_016797Re-query CCDS DB by Protein ID:NP_058077
Current member NCBI NM_016797.6 NP_058077.2 Accepted alive Link to Nucleotide Sequence:NM_016797.6Link to Protein Sequence:NP_058077.2Re-query CCDS DB by Nucleotide ID:NM_016797Re-query CCDS DB by Protein ID:NP_058077Link to BLAST:NP_058077.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345492.1 261 O70439 261 99.2337% 0 2
NP_058077.2 261 O70439 261 99.2337% 0 2

Chromosomal Locations for CCDS 23749.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 24155300 24155384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 24177166 24177235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 24179117 24179210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 24179926 24180063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 24180863 24180915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 24181518 24181614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 24182769 24182841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 24184987 24185069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 24187628 24187720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (786 nt):
ATGTCTTACACTCCGGGGATTGGTGGGGACTCTGCGCAGCTAGCACAACGCATCTCCTCTAACATCCAAA
AGATCACACAATGCTCCGTGGAAATACAAAGGACTCTGAATCAACTTGGAACACCTCAAGACTCACCGGA
ACTGAGGCAACAGCTGCAGCAGAAGCAGCAGTATACTAACCAACTTGCGAAAGAAACCGATAAGTACATT
AAAGAGTTTGGCTCTCTGCCCACCACCCCCAGTGAGCAGCGTCAGAGAAAGATACAGAAAGACCGATTAG
TGGCAGAGTTCACCACATCGCTGACAAACTTCCAGAAGGCCCAGAGGCAGGCTGCTGAGAGAGAGAAAGA
GTTCGTTGCTCGAGTGCGAGCCAGCTCCAGGGTATCGGGTGGTTTTCCTGAAGACAGCTCAAAAGAAAAG
AATCTTGTATCCTGGGAAAGCCAAACACAGCCTCAAGTGCAGGTCCAAGATGAAGAAATCACAGAGGATG
ACCTCCGACTCATTCATGAGAGAGAGTCTTCAATCAGGCAGCTGGAAGCTGATATTATGGACATTAATGA
AATATTTAAAGACTTGGGGATGATGATTCATGAACAAGGCGATATGATTGACAGCATAGAAGCCAATGTA
GAAAGTGCGGAAGTTCACGTTCAACAGGCAAACCAGCAGCTGTCAAGAGCGGCAGACTATCAGCGCAAAT
CCAGGAAAACTCTCTGCATTATCATTTTTATCCTCGTGGTCGGAATCGTGATCATCTGTCTCATCGTATG
GGGACTGAAAGGCTGA

Translation (261 aa):
MSYTPGIGGDSAQLAQRISSNIQKITQCSVEIQRTLNQLGTPQDSPELRQQLQQKQQYTNQLAKETDKYI
KEFGSLPTTPSEQRQRKIQKDRLVAEFTTSLTNFQKAQRQAAEREKEFVARVRASSRVSGGFPEDSSKEK
NLVSWESQTQPQVQVQDEEITEDDLRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDMIDSIEANV
ESAEVHVQQANQQLSRAADYQRKSRKTLCIIIFILVVGIVIICLIVWGLKG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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