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Report for CCDS18447.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18447.2 Public Mus musculus 4 Echdc2 23 108 98 CCDS HistoryNCBI Gene:52430Re-query CCDS DB by CCDS ID:18447.2See the combined annotation on chromosome 4 in Sequence Viewer

Public Note for CCDS 18447.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 18447.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052999.12 ENSMUSP00000051268.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052999.12Link to Ensembl Protein Viewer:ENSMUSP00000051268.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000052999Re-query CCDS DB by Protein ID:ENSMUSP00000051268
Original member Current member EBI ENSMUST00000116309.9 ENSMUSP00000112011.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116309.9Link to Ensembl Protein Viewer:ENSMUSP00000112011.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000116309Re-query CCDS DB by Protein ID:ENSMUSP00000112011
Original member Current member NCBI NM_026728.4 NP_081004.2 Accepted alive Link to Nucleotide Sequence:NM_026728.4Link to Protein Sequence:NP_081004.2Re-query CCDS DB by Nucleotide ID:NM_026728Re-query CCDS DB by Protein ID:NP_081004Link to BLAST:NP_081004.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081004.2 296 Q3TLP5-1 296 100% 0 0

Chromosomal Locations for CCDS 18447.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 108165529 108165661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108169715 108169782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108169861 108169948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108172089 108172175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108172880 108172972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108173795 108173851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108173987 108174174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108177073 108177123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108178371 108178418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108178907 108178984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (891 nt):
ATGCTACGCGTACTGCCCCGCGCGCTGCGCCTCCCGTGCTCCTGGAGGTTCTCGGGGGCCCGGGACTGCG
CCTCTCACGCGACGACCAGGACACCCGAAATCCAAGTGCAGGCTCTGACAGGTCCCAACCAAGGAATCAC
TGAGATTCTGATGAACAGACCTAATGCCCGCAATGCCTTGGGGAATGTGTTTGTTAGTGAGCTGCTGGAA
GCTCTGGCCCAGCTTCGGGAAGACCAGCAAGTCCGGGTCCTGCTCTTCAGAAGTGCGGTGAAGGGAGTGT
TCTGTGCAGGTGCAGACCTGAAGGAGCGGGAGCAGATGAGTGATGTGGAGGTGGGGACCTTTGTCCAGCG
GCTCCGAGGCCTGATGAGTGAGATCGCAGCCTTCCCTGTGCCCACCATTGCAGCCATGGATGGGTTTGCC
TTAGGCGGGGGCTTGGAACTTGCCCTGGCCTGTGACCTCCGAATAGCAGCTTCTTCGGCTGTCATGGGGC
TAATTGAGACCACTCGAGGACTTCTCCCAGGAGCAGGAGGGACTCAGAGGCTGCCTCGCTGCCTGGGCGT
GGCCCTAGCGAAGGAGCTCATCTTCACAGGCCGGCGACTGAACGGGGCACAGGCCCGTGAGTTGGGCCTG
GTAAATCATGCCGTGGCTCAGAATGAGGAGGGTAACGCTGCCTACCACCGGGCCCTGGCACTGGCACAGG
AGATCCTGCCCCAGGCTCCCATTGCTGTGCGCCTGGGCAAAGTTGCCATCGACAGAGGAATGGAGGTGGA
CATTGCATCAGGGATGGCCATAGAACAGATGTGCTATGCCCAGAACATCCCAACCCAGGACAGGCTGGAA
GGAATGGCAGCCTTCAGGGAGAAACGAGCTCCCAAATTTGTGGGCAAGTGA

Translation (296 aa):
MLRVLPRALRLPCSWRFSGARDCASHATTRTPEIQVQALTGPNQGITEILMNRPNARNALGNVFVSELLE
ALAQLREDQQVRVLLFRSAVKGVFCAGADLKEREQMSDVEVGTFVQRLRGLMSEIAAFPVPTIAAMDGFA
LGGGLELALACDLRIAASSAVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLNGAQARELGL
VNHAVAQNEEGNAAYHRALALAQEILPQAPIAVRLGKVAIDRGMEVDIASGMAIEQMCYAQNIPTQDRLE
GMAAFREKRAPKFVGK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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