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Report for CCDS19433.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19433.1 Public Mus musculus 5 Stbd1 23 108 98 CCDS HistoryNCBI Gene:52331Re-query CCDS DB by CCDS ID:19433.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 19433.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050952.3 ENSMUSP00000054322.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050952.3Link to Ensembl Protein Viewer:ENSMUSP00000054322.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000050952Re-query CCDS DB by Protein ID:ENSMUSP00000054322
Original member Current member NCBI NM_175096.3 NP_780305.1 Accepted alive Link to Nucleotide Sequence:NM_175096.3Link to Protein Sequence:NP_780305.1Re-query CCDS DB by Nucleotide ID:NM_175096Re-query CCDS DB by Protein ID:NP_780305Link to BLAST:NP_780305.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780305.1 338 Q8C7E7 338 100% 0 0

Chromosomal Locations for CCDS 19433.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 92603109 92603337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92604882 92605669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1017 nt):
ATGGGCGCCGTCTGGTCAGCCCTGCTGGTCGGCGGGGGTCTAGCTGGAGCGCTCATCCTGTGGCTGCTGC
GGGGAGACTCTGGGGCCCCGGGGAAAGACGGGGTTGCGGAGCCGCCGCAGAAGGGCGCACCTCCTGGGGA
GGCTGCGGCCCCGGGAGACGGTCCGGGTGGTGGTGGCAGTGGCGGCCTGAGCCCTGAACCTTCCGATCGG
GAGCTGGTCTCCAAAGCAGAGCATCTTCGAGAAAGCAACGGACATTTGATTTCTGAGAGCAAAGATCTTG
GTAACCTGCCGGAAGCACAGCGGCTGCAGAATGTTGGAGCAGACTGGGTCAATGCCAGAGAGTTTGTTCC
TGTTGGGAAGATTCCAGACACACACTCCAGGGCCGACTCTGAAGCGGCAAGAAATCAAAGCCCAGGATCT
CATGGAGGAGAATGGAGACTCCCCAAAGGACAAGAAACAGCTGTCAAAGTAGCTGGCAGTGTGGCCGCAA
AGCTGCCCTCCAGCAGCCTGCTTGTGGACAGAGCTAAAGCAGTCAGTCAGGACCAGGCAGGCCACGAGGA
CTGGGAAGTGGTGTCTAGGCACTCATCTTGGGGGAGTGTTGGTTTGGGTGGCAGTCTTGAGGCTTCTAGG
TTAAGTCTAAATCAGAGAATGGACGACAGCACAAACAGTCTTGTGGGAGGAAGAGGCTGGGAAGTAGATG
GGAAAGTGGCATCTCTGAAACCTCAACAGGTCAGCATCCAGTTCCAGGTGCACTACACCACAAACACCGA
TGTGCAGTTCATTGCAGTGACTGGAGACCATGAGAGCCTTGGGAGATGGAACACATACATCCCACTCCAC
TACTGCAAAGACGGGCTCTGGTCTCATTCTGTCTTCCTGCCTGCAGACACAGTGGTGGAGTGGAAGTTCG
TGTTGGTAGAGAATAAGGAAGTTACTCGTTGGGAAGAATGCAGCAATAGATTCCTGCAGACTGGCCATGA
GGATAAAGTGGTTCATGGGTGGTGGGGGATTCACTGA

Translation (338 aa):
MGAVWSALLVGGGLAGALILWLLRGDSGAPGKDGVAEPPQKGAPPGEAAAPGDGPGGGGSGGLSPEPSDR
ELVSKAEHLRESNGHLISESKDLGNLPEAQRLQNVGADWVNAREFVPVGKIPDTHSRADSEAARNQSPGS
HGGEWRLPKGQETAVKVAGSVAAKLPSSSLLVDRAKAVSQDQAGHEDWEVVSRHSSWGSVGLGGSLEASR
LSLNQRMDDSTNSLVGGRGWEVDGKVASLKPQQVSIQFQVHYTTNTDVQFIAVTGDHESLGRWNTYIPLH
YCKDGLWSHSVFLPADTVVEWKFVLVENKEVTRWEECSNRFLQTGHEDKVVHGWWGIH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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