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Report for CCDS16762.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16762.1 Public Mus musculus 2 Rnf24 23 108 98 CCDS HistoryNCBI Gene:51902Re-query CCDS DB by CCDS ID:16762.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16762.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059372.10 ENSMUSP00000058630.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059372.10Link to Ensembl Protein Viewer:ENSMUSP00000058630.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000059372Re-query CCDS DB by Protein ID:ENSMUSP00000058630
Original member Current member EBI ENSMUST00000110194.7 ENSMUSP00000105823.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110194.7Link to Ensembl Protein Viewer:ENSMUSP00000105823.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110194Re-query CCDS DB by Protein ID:ENSMUSP00000105823
Original member Current member EBI ENSMUST00000165420.7 ENSMUSP00000129843.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165420.7Link to Ensembl Protein Viewer:ENSMUSP00000129843.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165420Re-query CCDS DB by Protein ID:ENSMUSP00000129843
Original member NCBI NM_178607.4 NP_848722.1 Updated not alive Link to Nucleotide Sequence:NM_178607.4Link to Protein Sequence:NP_848722.1Re-query CCDS DB by Nucleotide ID:NM_178607Re-query CCDS DB by Protein ID:NP_848722
Current member NCBI NM_178607.5 NP_848722.1 Accepted alive Link to Nucleotide Sequence:NM_178607.5Link to Protein Sequence:NP_848722.1Re-query CCDS DB by Nucleotide ID:NM_178607Re-query CCDS DB by Protein ID:NP_848722Link to BLAST:NP_848722.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848722.1 148 Q8BGI1 148 100% 0 0

Chromosomal Locations for CCDS 16762.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 131303442 131303580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131304252 131304331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131305652 131305693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131308475 131308517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131313163 131313305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (447 nt):
ATGAGCTCAGATTTCCCACATTATAACTTCAGGATGCCTAATATTGGATTCCAGAATCTGCCTCTCAACA
TCTATATCGTGGTTTTTGGCACTGCTGTGTTTGTCTTCATCCTTAGTTTACTCTTCTGTTGCTACTTGAT
TAGGCTGAGACATCAAGCACACAAAGAATTTTATGCCTACAAACAGGTTATATTAAAAGAAAAAGTAAAA
GAACTTAATCTACATGAGCTCTGTGCTGTGTGTCTAGAAGACTTCAAGCCTAGAGATGAACTGGGTATTT
GCCCATGTAAGCATGCCTTCCACAGAAAGTGCCTTGTTAAGTGGCTGGAAGTCCGGAAAGTGTGTCCCCT
GTGCAACATGCCGGTGCTGCAGCTGGCCCAATTGCACAGTAAACAGGACCGCGGTCCCCCTCAGGAGCCC
CTCCCTGGGGCAGAGAATATTGTATAG

Translation (148 aa):
MSSDFPHYNFRMPNIGFQNLPLNIYIVVFGTAVFVFILSLLFCCYLIRLRHQAHKEFYAYKQVILKEKVK
ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLVKWLEVRKVCPLCNMPVLQLAQLHSKQDRGPPQEP
LPGAENIV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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