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Report for CCDS39344.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39344.1 Public Mus musculus 5 Stag3 23 108 98 CCDS HistoryNCBI Gene:50878Re-query CCDS DB by CCDS ID:39344.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39344.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048028.14 ENSMUSP00000040945.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048028.14Link to Ensembl Protein Viewer:ENSMUSP00000040945.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000048028Re-query CCDS DB by Protein ID:ENSMUSP00000040945
Original member Current member EBI ENSMUST00000162245.7 ENSMUSP00000125523.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162245.7Link to Ensembl Protein Viewer:ENSMUSP00000125523.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162245Re-query CCDS DB by Protein ID:ENSMUSP00000125523
Original member Current member NCBI NM_016964.2 NP_058660.2 Accepted alive Link to Nucleotide Sequence:NM_016964.2Link to Protein Sequence:NP_058660.2Re-query CCDS DB by Nucleotide ID:NM_016964Re-query CCDS DB by Protein ID:NP_058660Link to BLAST:NP_058660.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058660.2 1240 O70576 1240 100% 0 0

Chromosomal Locations for CCDS 39344.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 138281875 138282038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138282619 138282715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138283033 138283152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138289196 138289292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138290191 138290267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138290709 138290913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138291330 138291481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138295834 138295907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138296702 138296825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138297327 138297425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138297623 138297702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138297966 138298073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138298279 138298393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138298517 138298622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138298808 138298911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138299131 138299223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138299339 138299428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138299653 138299853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138299954 138300024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138300124 138300211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138300782 138300859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138300942 138301034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138301157 138301325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138301434 138301570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138302524 138302625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138304042 138304190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138304374 138304502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138304585 138304742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138308469 138308655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138308827 138308928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138309199 138309271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138311734 138311805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138312036 138312044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3723 nt):
ATGCCTACTCTGTGGTCACCTTCTACCCAGCACCATGGCTCTTCCTCAGGCAGTGAGTCTTCCCCACTTC
AAAAGTCTGTGAGACGTGCACAGATGGCCTTGTCTCCTTGTTCCTCCTCCATCCTACCCTGTGATGACAG
AGACTCACAGGGAACTGCAGAGTGGGATAGTCCCTCAACTAACGAAGACAGCGACTTTGAAGACAGCTTA
AGACGAAATGTGAAGAAGAGAGCAGCAAAGCAACCACCCAAAGCTGTTCCAGCAGCAAAACATCGGAAGA
AGCAGTCCCGAATAGTATCTAGTGGGAATGGCAAGAATGAATCAGTGCCATCAACCAATTACCTTTTTGA
TGCTGTGAAAGCTGCTAGAAGTTGCATGCAGTCTTTGGTGGATGAGTGGCTAGATAACTACAAGCAAGAT
GAAAATGCAGGATTCTTGGAGCTCATTAATTTTTTCATCCGAGCCTGTGGATGTAAAAGCACTGTGACTC
CTGAGATGTTCAAGACAATGTCCAATTCAGAGATCATCCAACACCTAACGGAAGAGTTTAATGAGGACTC
GGGGGACTATCCCCTGACAGCTCCAGGTCCCTCCTGGAAGAAGTTCCAGGGAAGCTTCTGTGAGTTTGTG
AAGACATTGGTCTATCAGTGCCAGTACAGTCTCCTCTATGATGGCTTTCCTATGGATGACCTTATCTCCC
TGCTCATTGGCCTCTCAGATTCCCAGGTCCGAGCCTTTCGTCATACTAGTACCCTGGCTGCCATGAAGCT
AATGACTTCTCTGGTAAAAGTTGCACTCCAGTTGAGTCTGCACAAAGACAACAATCAACGTCAGTATGAG
GCTGAACGAAACAAGGGGCCAGAGCAGAGAGCACCGGAACGACTGGAGAGTCTGCTGGAGAAACGAAAAG
AGTTCCAAGAGAATCAAGAGGACATAGAGGGGATGATGAATGCCATCTTCAGAGGTGTCTTTGTCCATCG
GTACAGGGACATCCTTCCTGAGATCCGCGCTATCTGCATTGAGGAGATTGGGTATTGGATGCAAAGCTAC
AGCACCTCCTTTCTTAATGACAGCTACCTAAAATACATCGGCTGGACCCTGCATGATAAGCACAAGGAAG
TTCGCCTGAAGTGTGTGAAGGCTCTGGCAGGGCTGTACAGCAACCAGGAGCTGAGCTTACGGATGGAGCT
CTTTACAAATCGCTTCAAGGACCGGATGGTTTCCATGGTCATGGACAGAGAGTGTGAAGTAGCAGTGGAG
GCCATCAGATTGCTGACCCTTATTCTGAAGAACATGGAGGGAGTGCTGACTAGTGCAGACTGTGAGAAAA
TTTACTCCATTGTATACATTTCTAATCGTGCTATGGCCTCTTCTGCAGGGGAATTTGTGTATTGGAAGAT
CTTCCATCCTGAATGTGGGGCAAAAGCAGTGAGTGATAGAGAGCGACGCCGGAGTCCACAAGCCCAGAAG
ACTTTCATTTATCTTTTACTGGCCTTCTTTATGGAGAGTGAGCATCACAACCATGCTGCTTACTTAGTAG
ACAGCTTGTGGGACTGTGCGGGGTCTTACCTGAAGGACTGGGAGAGTCTGACAAACCTGTTGCTGCAGAA
AGACCAGAATCTGGGTGATATGCAAGAGAGAATGCTGATAGAAATCCTTGTGTCTAGTGCCCGGCAAGCT
GCAGAGGGTCACCCTCCAGTGGGGCGCATCACTGGAAAGAAGAGTCTGACGGCCAAAGAACGCAAGCTTC
AAGCCTATGATAAGATGAAGCTGGCTGAGCACCTCATCCCCCTCTTGCCCCAGCTCCTTGCCAAGTTCTC
AGCAGATGCAGAGAATGTTGCTCCCTTGCTCCAGCTGCTCAGTTACTTTGACCTCAGCATATATTGCACT
CAGCGCTTGGAAAAGCACTTGGAGCTGCTTCTGCAACAACTCCAGGAGGTGGTGGTGAAGCATGTAGAGC
CTGAGGTGCTTGAGGCAGCAGCCCATGCCCTCTATCTGCTCTGCAAACCAGAGTTCACCTTCTTCAGCAG
AGTGGACTTTGCCAGAAGCCAATTAGTAGATTTTCTGACTGATAGATTCCAGCAGGAGCTTGATGACCTA
ATGCAGTCATCCTTCCTAGATGAGGATGAGGTATACAGCCTGACAGCCACCCTGAAGCGTCTCTCTGCCT
TTTACAATGCTCATGACCTGACCCGATGGGAGATCTCTGAACCATGTTCTCGACTCCTCCGGAAGGCTGT
AGACACAGGAGAAGTTCCTCACCAGGTGATTTTGCCAGCCTTGACTCTGGTATATTTTTCCATTCTCTGG
ACAGTAACCCACATTTCAGAGTCTACTTCTCATAAGCAGCTGATGAGTCTGAAGAAAAGAATGGTAGCCT
TCTGTGAGCTTTGCCAAAGCTGCCTCTCAGACGTGGACCCAGAGATCCAGGAGCAGGCTTTTGTCTTATT
AAGTGACCTGCTTCTCATCTTCAGCCCTCAGATGATTGTAGGGGGACGGGATTTCCTTAGGCCTCTTGTC
TTTTTTCCGGAAGCTACTCTCCAGTCGGAACTAGCCAGCTTCCTCATGGACCATGTCTTTCTCCAGCCTG
GAGAACTGGGCAACGGTCAGTCACAGGAGGATCACGTCCAGATAGAACTTCTGCACCAGAGGCGCCGCCT
GCTTGCAGGATTTTGTAAGCTGCTGCTTTATGGGGTATTGGAGCTGGATGCAGCCTCAGACGTTTTCAAA
CACTACAACAAGTTCTATGAAGACTATGGTGACATTATCAAGGAAACATTAACTCGAGCAAGACAAATTG
ACAGATGTCAGTGCTCTCGGATCCTGCTCCTGAGCCTAAAGCAGCTCTACACAGAACTGATACAGGAGCA
GGGCCCCCAGGGCCTGACAGAACTGCCAGCCTTCATTGAGATGAGAGACTTGGCTCGGAGGTTTGCCTTG
AGCTTTGGACCCCAGCAGCTCCATAACCGAGATCTTGTGGTCATGCTGCACAAGGAAGGCATCAAGTTCT
CATTGTCTGAGCTTCCTCCTGCTGGTTCTTCTCATGAGCCCCCAAATCTTGCATTCCTGGAGCTTCTTTC
AGAGTTCTCCCCTCGCCTCTTCCATCAGGACAAGCGGCTACTACTATCCTACCTGGAAAAGTGTCTGCAG
CGTGTCTCCAAGGCACCTAACCATCCCTGGGGTCCAGTCACCACCTACTGCCACTCCCTTCACCCTCTAG
AGATCACAGCAGAGGCCAGCCCTCGTGGACCCCCCCACTCCAAGAAGAGGTGTGTTGAAGGCCCCTGCAG
GCCTCAGGAAGAAGAGTCCTCATCCCAGGAAGAAAGCCTTCAGCTGAACAGTGGCCCCACAACCCCTACC
CTCACCTCCACCGCAGTGAAGAGGAAGCAGTCTCTGAGGACAGTGGGCAAGAAGCAAAAAGGTAGACCAG
GACCAGGACCAGGACCAGGACCAGAGCTGATCTGCAGTCAGCAACTCTTAGGCACCCAGAGGTTGAAGAT
GTCGAGTGCACCATGTTTCCAGATTCGATGTGATCCTTCAGGCTCTGGCTTGGGCAAGCAGCTGACCCGA
CTCAGCCTTATGGAAGAAGATGAGGAAGAAGAGCTAAGACTTCTGGATGAAGAATGGCAACGTGGAGACA
AGATGCTTCATAGCCCTTCTTCTCCCAGTGAGCATGGGTTGGACCTATTAGATACAACAGAGCTGAACAT
GGAGGATTTCTGA

Translation (1240 aa):
MPTLWSPSTQHHGSSSGSESSPLQKSVRRAQMALSPCSSSILPCDDRDSQGTAEWDSPSTNEDSDFEDSL
RRNVKKRAAKQPPKAVPAAKHRKKQSRIVSSGNGKNESVPSTNYLFDAVKAARSCMQSLVDEWLDNYKQD
ENAGFLELINFFIRACGCKSTVTPEMFKTMSNSEIIQHLTEEFNEDSGDYPLTAPGPSWKKFQGSFCEFV
KTLVYQCQYSLLYDGFPMDDLISLLIGLSDSQVRAFRHTSTLAAMKLMTSLVKVALQLSLHKDNNQRQYE
AERNKGPEQRAPERLESLLEKRKEFQENQEDIEGMMNAIFRGVFVHRYRDILPEIRAICIEEIGYWMQSY
STSFLNDSYLKYIGWTLHDKHKEVRLKCVKALAGLYSNQELSLRMELFTNRFKDRMVSMVMDRECEVAVE
AIRLLTLILKNMEGVLTSADCEKIYSIVYISNRAMASSAGEFVYWKIFHPECGAKAVSDRERRRSPQAQK
TFIYLLLAFFMESEHHNHAAYLVDSLWDCAGSYLKDWESLTNLLLQKDQNLGDMQERMLIEILVSSARQA
AEGHPPVGRITGKKSLTAKERKLQAYDKMKLAEHLIPLLPQLLAKFSADAENVAPLLQLLSYFDLSIYCT
QRLEKHLELLLQQLQEVVVKHVEPEVLEAAAHALYLLCKPEFTFFSRVDFARSQLVDFLTDRFQQELDDL
MQSSFLDEDEVYSLTATLKRLSAFYNAHDLTRWEISEPCSRLLRKAVDTGEVPHQVILPALTLVYFSILW
TVTHISESTSHKQLMSLKKRMVAFCELCQSCLSDVDPEIQEQAFVLLSDLLLIFSPQMIVGGRDFLRPLV
FFPEATLQSELASFLMDHVFLQPGELGNGQSQEDHVQIELLHQRRRLLAGFCKLLLYGVLELDAASDVFK
HYNKFYEDYGDIIKETLTRARQIDRCQCSRILLLSLKQLYTELIQEQGPQGLTELPAFIEMRDLARRFAL
SFGPQQLHNRDLVVMLHKEGIKFSLSELPPAGSSHEPPNLAFLELLSEFSPRLFHQDKRLLLSYLEKCLQ
RVSKAPNHPWGPVTTYCHSLHPLEITAEASPRGPPHSKKRCVEGPCRPQEEESSSQEESLQLNSGPTTPT
LTSTAVKRKQSLRTVGKKQKGRPGPGPGPGPELICSQQLLGTQRLKMSSAPCFQIRCDPSGSGLGKQLTR
LSLMEEDEEEELRLLDEEWQRGDKMLHSPSSPSEHGLDLLDTTELNMEDF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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