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Report for CCDS56904.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56904.1 Public Mus musculus 13 Tcstv7a 23 108 98 CCDS HistoryNCBI Gene:380878Re-query CCDS DB by CCDS ID:56904.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 56904.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000179455.1 ENSMUSP00000136704.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179455.1Link to Ensembl Protein Viewer:ENSMUSP00000136704.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179455Re-query CCDS DB by Protein ID:ENSMUSP00000136704
Original member Current member EBI ENSMUST00000195234.1 ENSMUSP00000141964.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000195234.1Link to Ensembl Protein Viewer:ENSMUSP00000141964.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000195234Re-query CCDS DB by Protein ID:ENSMUSP00000141964
Original member Current member NCBI NM_001001449.3 NP_001001449.1 Accepted alive Link to Nucleotide Sequence:NM_001001449.3Link to Protein Sequence:NP_001001449.1Re-query CCDS DB by Nucleotide ID:NM_001001449Re-query CCDS DB by Protein ID:NP_001001449Link to BLAST:NP_001001449.1

Chromosomal Locations for CCDS 56904.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 119828167 119828658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (492 nt):
ATGAAGCGGTTCTGTCCCTGTCTTGTCCAAGATACATCACATTCCGAAGAGCATGCACTGCAGACTTCAC
AAGAATTGCCAGCCCTGAGACCACGATATTCCAGGTCTGAGCCACAGTGTTTCTGTGGAGAGCCAAACCA
CTGCCATGAGGATGACTGGATTGTTGATTGGGAACCATACTACCTTCCCTGTGTACTTGAAAGCTGGGAC
TGCTTGAGATACCACTCCGGATTGAATTGTGCCATGAAGAAGGGCACAGAGGTCTTCCAGATTGAGAGTC
AGAGGGGGCCACAAGTGTTCCCAGGAGATATGGACAATGACAAAGATACAGAGGAGCCAGACCAACCCTT
GCCAAGCTTGCTCAGGGAGAAAGGGCTGGAACTTGAGACCTGTGATGGTGGAGACTGCCCTGACCAGGAT
CCCGCTTCTGACAGTCCCAAGCACCTAGGCTGCTGCTTATGGCTTCAAAGGGCTTTTGGCCAGAAGAAGT
GA

Translation (163 aa):
MKRFCPCLVQDTSHSEEHALQTSQELPALRPRYSRSEPQCFCGEPNHCHEDDWIVDWEPYYLPCVLESWD
CLRYHSGLNCAMKKGTEVFQIESQRGPQVFPGDMDNDKDTEEPDQPLPSLLREKGLELETCDGGDCPDQD
PASDSPKHLGCCLWLQRAFGQKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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