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Report for CCDS27725.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27725.1 Public Mus musculus 15 Gtse1 23 108 98 CCDS HistoryNCBI Gene:29870Re-query CCDS DB by CCDS ID:27725.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27725.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170629.2 ENSMUSP00000128759.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170629.2Link to Ensembl Protein Viewer:ENSMUSP00000128759.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170629Re-query CCDS DB by Protein ID:ENSMUSP00000128759
Original member Current member EBI ENSMUST00000231074.1 ENSMUSP00000155552.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000231074.1Link to Ensembl Protein Viewer:ENSMUSP00000155552.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000231074Re-query CCDS DB by Protein ID:ENSMUSP00000155552
Original member NCBI NM_001168672.1 NP_001162143.1 Updated not alive Link to Nucleotide Sequence:NM_001168672.1Link to Protein Sequence:NP_001162143.1Re-query CCDS DB by Nucleotide ID:NM_001168672Re-query CCDS DB by Protein ID:NP_001162143
Current member NCBI NM_001168672.2 NP_001162143.1 Accepted alive Link to Nucleotide Sequence:NM_001168672.2Link to Protein Sequence:NP_001162143.1Re-query CCDS DB by Nucleotide ID:NM_001168672Re-query CCDS DB by Protein ID:NP_001162143Link to BLAST:NP_001162143.1
Original member NCBI NM_013882.2 NP_038910.1 Updated not alive Link to Nucleotide Sequence:NM_013882.2Link to Protein Sequence:NP_038910.1Re-query CCDS DB by Nucleotide ID:NM_013882Re-query CCDS DB by Protein ID:NP_038910
Current member NCBI NM_013882.3 NP_038910.1 Accepted alive Link to Nucleotide Sequence:NM_013882.3Link to Protein Sequence:NP_038910.1Re-query CCDS DB by Nucleotide ID:NM_013882Re-query CCDS DB by Protein ID:NP_038910Link to BLAST:NP_038910.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001162143.1 741 Q8R080 741 100% 0 0
NP_038910.1 741 Q8R080 741 100% 0 0

Chromosomal Locations for CCDS 27725.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 85860071 85860095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 85861901 85861958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 85862068 85862695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 85864107 85864262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 85867475 85867601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 85868680 85869057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 85871509 85871581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 85873640 85873876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 85874975 85875218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 85875536 85875751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 85876149 85876232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2226 nt):
ATGGATGCTGGTAGTAAAAAAGAAGACTTTCTTCTTTTGGAAGATGAAAAATTTGACTTCGATCTTTCCT
TGTCTTCTTCAAGCACAAATGAAGATGATGAAGTCTTTTTTGGGCCTGTTGGACATAAAGAAAGATGCAT
TGCTGCCAGTTTGGACTTAAACCGCCGGGTTCCTGGGCAGCCTCTTGCCCCGGGCTCTGGTAGCCCTTGC
ACCTTGAGCCCTCTCACTGGGGAGAAGTTTGTGGAGGTGTACAAAGAAGCCCACTTACTGGCCTTACAGA
TAGAAAGTCACAGCCGAAGAGAGGTGGCCCAGGCTGCCACGCCCCAAAATCCTGTGAACCAGGGCAAGGA
AACGTTTGTGCAGGACTCACAGTTAAAAGTAAGCCTCTTTGAGAAAGAACAGAAGAGAGACAGAAGTCCC
ATGTCACTTAAAAGAGAGACATTCTGCCTGCCATCCTCGAGGGTGCAACCGCCCATGGGGGAGCCCCAGC
TCCTGGCTTCTCCAGGCCTGCTCAGCTCCCCTGTCTCAGCAGGCCCTGCTCAGACCCAGAGCAACCAGGG
TCTGCCCTGTTCCTCTCAGCCGTTGCCAAGAGAATCAAGTACCTCCCAGCCTCCAAGTCAGGCTGGGCCT
CAAAAGAGGATCACCAGCAAGCTCCAGCCACCTCGGGCTTTGCCTGTGAGAGGAAGAAACCTTCACCTGG
CTACAGAGAAGCTCAAAAAAGAGGTGCCAGCCAGCATTCAGAGGACGAAACTCGTGAATGAAAAGGGATC
CCAGAGTGACGTGCTCCAGGACAAACCCAGCACAGCTCCAGATGCTGCCAGTCGAGAAGGCCACCCAGGC
AAGCGGTCACTCCCCATTCCTGGCAAGTTGGGGCTAAAGAAGACCCTGTTAAAGCCACCTGGCTATACTG
GCAATCTCACAAGGAAGTCCTCTACCTCAGGGTCTGCTTCAAGCCTCGAGTCTGGTGTCTACAGGTCTTC
AGTAGCAGGCAAAGCAAAGTCCAGTGAACAACGTTCAAGTATTCCTGCTAGCGGCTCCCAGCGTCGGACG
AGTACCAGCAAGTCAGGCAGAATAGGACCCGCCGCGTCACGCCAGGCTTTGCCAGCAGCCCCTGCCAGGG
TGTTTGGCAGACAAGCCAATAAGGCTGATGCTGCCCAGACAGTGGCTGAGCAGCCCAAGGTCCCCACCCT
GAGTCCTCTCACCCAACAACCCCAGACTCCAGAGCAAAGAGGACCAAGGCTGGACCCCGACACCGAGACA
CCTCAGTTGAATAAAACTGTCAGCATAAAACGACGGGACTCCTATCTGAGCTGCAAGACAGAGGCCGTGT
CTACCACAACAAACCCATTTAAAGTGCCCCAGTTTTCTGTTGGCGAGTCACCTGGAGGAGTAACCCCAAA
GTTCTCACGGACACATCGGCTGCAGTCCTGGACACCAGCGAGCAGGGTGGTCAGCAGCACTCCTGTGAGA
CGCTCATCAGGGACTACTCCACAAGGCCTGCCCGGCAGTATGAGGACCCCTCTGAGCACAAGACGGATGT
CAGTGTTGCCTACACCTGCCAGTCGGCGTCTCTCCAGCCTTCCATTAATGGCACCTCAGTCCATGCCCAG
GGCTCTGGTGTCCCCACTGTGTGTGCCTGCCCGGCGACTCTCATCTGAGCCCAGGAGAAGATCTACAGTT
AGAGCAGAGCTGACGCAGGAGAGCAGCGGCAGCGGCAGTGGTGGGCAGGCCCAGGGCCTGTCCTCAGATG
AGAGCTCTTCCCCTCCATCCTCCGTGCCTCAAGCACTTAACTTTTCTCCAGAGAAGAGTGCCTCCCCTCC
TCCCCAAGGCTCCTCCACAGGAGCAGCTCAGGGTGAAGCAGAGCCTCCTGAAGACACGCTGCCCAGTGAG
GTGCATGGAGGTGGTTGCAGCCACACGCCATCTGAGGGTCTTCTCCTGGACCTCAAGCTGGACCAGCTCA
CCATCACCCCTGAAGCAGGAGGCAGAGACCTGGCCGACTGCCCTCTCATCGACTTCAGCAACACCCCTGA
GTCGAACACGGCCTTGGGACCTAGCAGCTGGCCCCTGATTGACCTCATAATGAACACTCCAGACATGGGT
AGAAATGATGTGGGGAAGCCTGCAAAGGCTGAGCTGGGCCAGCTGATCGACCTGGGCTCCCCACTGATCC
AGCTGAGCCCTGAGGCTGACAAAGAGAACGTGGACTCACCGCTTCTCAAGTTCTGA

Translation (741 aa):
MDAGSKKEDFLLLEDEKFDFDLSLSSSSTNEDDEVFFGPVGHKERCIAASLDLNRRVPGQPLAPGSGSPC
TLSPLTGEKFVEVYKEAHLLALQIESHSRREVAQAATPQNPVNQGKETFVQDSQLKVSLFEKEQKRDRSP
MSLKRETFCLPSSRVQPPMGEPQLLASPGLLSSPVSAGPAQTQSNQGLPCSSQPLPRESSTSQPPSQAGP
QKRITSKLQPPRALPVRGRNLHLATEKLKKEVPASIQRTKLVNEKGSQSDVLQDKPSTAPDAASREGHPG
KRSLPIPGKLGLKKTLLKPPGYTGNLTRKSSTSGSASSLESGVYRSSVAGKAKSSEQRSSIPASGSQRRT
STSKSGRIGPAASRQALPAAPARVFGRQANKADAAQTVAEQPKVPTLSPLTQQPQTPEQRGPRLDPDTET
PQLNKTVSIKRRDSYLSCKTEAVSTTTNPFKVPQFSVGESPGGVTPKFSRTHRLQSWTPASRVVSSTPVR
RSSGTTPQGLPGSMRTPLSTRRMSVLPTPASRRLSSLPLMAPQSMPRALVSPLCVPARRLSSEPRRRSTV
RAELTQESSGSGSGGQAQGLSSDESSSPPSSVPQALNFSPEKSASPPPQGSSTGAAQGEAEPPEDTLPSE
VHGGGCSHTPSEGLLLDLKLDQLTITPEAGGRDLADCPLIDFSNTPESNTALGPSSWPLIDLIMNTPDMG
RNDVGKPAKAELGQLIDLGSPLIQLSPEADKENVDSPLLKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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