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Report for CCDS44868.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44868.2 Public Homo sapiens 12 SENP1 24 110 108 CCDS HistoryNCBI Gene:29843Re-query CCDS DB by CCDS ID:44868.2See the combined annotation on chromosome 12 in Sequence Viewer

Public Note for CCDS 44868.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 44868.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000448372.5 ENSP00000394791.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000448372.5Link to Ensembl Protein Viewer:ENSP00000394791.2Re-query CCDS DB by Nucleotide ID:ENST00000448372Re-query CCDS DB by Protein ID:ENSP00000394791
Original member Current member EBI ENST00000549518.6 ENSP00000447328.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000549518.6Link to Ensembl Protein Viewer:ENSP00000447328.1Re-query CCDS DB by Nucleotide ID:ENST00000549518Re-query CCDS DB by Protein ID:ENSP00000447328
Original member Current member NCBI NM_001267594.2 NP_001254523.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001267594.2Link to Protein Sequence:NP_001254523.1Re-query CCDS DB by Nucleotide ID:NM_001267594Re-query CCDS DB by Protein ID:NP_001254523Link to BLAST:NP_001254523.1
Original member Current member NCBI NM_001267595.2 NP_001254524.1 Accepted alive Link to Nucleotide Sequence:NM_001267595.2Link to Protein Sequence:NP_001254524.1Re-query CCDS DB by Nucleotide ID:NM_001267595Re-query CCDS DB by Protein ID:NP_001254524Link to BLAST:NP_001254524.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001254523.1 644 Q9P0U3-1 644 100% 0 0
NP_001254524.1 644 Q9P0U3-1 644 100% 0 0

Chromosomal Locations for CCDS 44868.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 48045322 48045384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 48046356 48046451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 48046978 48047062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 48048001 48048080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 48048929 48049132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 48063710 48063841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 48065065 48065220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 48065596 48065680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 48066927 48066965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 48071667 48071721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 48074324 48074607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 48074690 48074793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 48083591 48083762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 48088801 48088960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 48096343 48096427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 48097994 48098124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 48101469 48101472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1935 nt):
ATGGATGATATTGCTGATAGGATGAGGATGGATGCTGGAGAAGTGACTTTAGTGAACCACAACTCCGTAT
TCAAAACCCACCTCCTGCCACAAACAGGTTTTCCAGAGGACCAGCTTTCGCTTTCTGACCAGCAGATTTT
ATCTTCCAGGCAAGGACATTTGGACCGATCTTTTACATGTTCCACAAGAAGTGCAGCTTATAATCCAAGC
TATTACTCAGATAATCCTTCCTCAGACAGTTTTCTTGGCTCAGGCGATTTAAGAACCTTTGGCCAGAGTG
CAAATGGCCAATGGAGAAATTCTACCCCATCGTCAAGCTCATCTTTACAAAAATCAAGAAACAGCCGAAG
TCTTTACCTCGAAACCCGAAAGACCTCAAGTGGATTATCAAACAGTTTTGCGGGAAAGTCAAACCATCAC
TGCCATGTATCTGCATATGAAAAATCTTTTCCTATTAAACCTGTTCCAAGTCCATCTTGGAGTGGTTCAT
GTCGTCGAAGTCTTTTGAGCCCCAAGAAAACTCAGAGGCGACATGTTAGTACAGCAGAAGAGACAGTTCA
AGAAGAAGAAAGAGAGATTTACAGACAGCTGCTACAGATGGTCACAGGGAAACAGTTTACTATAGCCAAA
CCCACCACACATTTTCCTTTACACCTGTCTCGATGTCTTAGTTCCAGTAAAAATACTTTGAAAGACTCAC
TGTTTAAAAATGGAAACTCTTGTGCATCTCAGATCATTGGCTCTGATACTTCATCATCTGGATCTGCCAG
CATTTTAACTAACCAGGAACAGCTGTCCCACAGTGTATATTCCCTATCTTCTTATACCCCAGATGTTGCA
TTTGGATCCAAAGATTCTGGTACTCTTCATCATCCCCATCATCACCACTCTGTTCCACATCAGCCAGATA
ACTTAGCAGCTTCAAATACACAATCTGAAGGATCAGACTCTGTGATTTTACTGAAAGTGAAAGATTCCCA
GACTCCAACTCCCAGTTCTACTTTCTTCCAGGCAGAGCTGTGGATCAAAGAATTAACTAGTGTTTATGAT
TCTCGAGCACGAGAAAGATTGCGCCAGATTGAAGAACAGAAGGCATTGGCCTTACAGCTTCAAAACCAGA
GATTGCAGGAGCGGGAACATTCAGTACATGATTCAGTAGAACTACATCTTCGTGTACCTCTTGAAAAGGA
GATTCCTGTTACTGTTGTCCAAGAAACACAAAAAAAAGGTCATAAATTAACTGATAGTGAAGATGAATTT
CCTGAAATTACAGAGGAAATGGAGAAAGAAATAAAGAATGTATTTCGTAATGGGAATCAGGATGAAGTTC
TCAGTGAAGCATTTCGCCTGACCATTACACGCAAAGATATTCAAACTCTAAACCATCTGAATTGGCTCAA
TGATGAGATCATCAATTTCTACATGAATATGCTGATGGAGCGAAGTAAAGAGAAGGGCTTGCCAAGTGTG
CATGCATTTAATACCTTTTTCTTCACTAAATTAAAAACGGCTGGTTATCAGGCAGTGAAACGTTGGACAA
AGAAAGTAGATGTATTTTCTGTTGACATTCTTTTGGTGCCCATTCACCTGGGAGTACACTGGTGTCTAGC
TGTTGTGGACTTTAGAAAGAAGAATATTACCTATTACGACTCCATGGGTGGGATAAACAATGAAGCCTGC
AGAATACTCTTGCAATACCTAAAGCAAGAAAGCATTGACAAGAAAAGGAAAGAGTTTGACACCAATGGCT
GGCAGCTTTTCAGCAAGAAAAGCCAGGAGATTCCTCAGCAGATGAATGGAAGTGACTGTGGGATGTTTGC
CTGCAAATATGCTGACTGTATTACCAAAGACAGACCAATCAACTTCACACAGCAACACATGCCATACTTC
CGGAAGCGGATGGTCTGGGAGATCCTCCACCGAAAACTCTTGTGA

Translation (644 aa):
MDDIADRMRMDAGEVTLVNHNSVFKTHLLPQTGFPEDQLSLSDQQILSSRQGHLDRSFTCSTRSAAYNPS
YYSDNPSSDSFLGSGDLRTFGQSANGQWRNSTPSSSSSLQKSRNSRSLYLETRKTSSGLSNSFAGKSNHH
CHVSAYEKSFPIKPVPSPSWSGSCRRSLLSPKKTQRRHVSTAEETVQEEEREIYRQLLQMVTGKQFTIAK
PTTHFPLHLSRCLSSSKNTLKDSLFKNGNSCASQIIGSDTSSSGSASILTNQEQLSHSVYSLSSYTPDVA
FGSKDSGTLHHPHHHHSVPHQPDNLAASNTQSEGSDSVILLKVKDSQTPTPSSTFFQAELWIKELTSVYD
SRARERLRQIEEQKALALQLQNQRLQEREHSVHDSVELHLRVPLEKEIPVTVVQETQKKGHKLTDSEDEF
PEITEEMEKEIKNVFRNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSV
HAFNTFFFTKLKTAGYQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEAC
RILLQYLKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDCGMFACKYADCITKDRPINFTQQHMPYF
RKRMVWEILHRKLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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