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Report for CCDS34171.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34171.1 Public Homo sapiens 5 SREK1IP1 24 110 108 CCDS HistoryNCBI Gene:285672Re-query CCDS DB by CCDS ID:34171.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34171.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000513458.9 ENSP00000427401.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000513458.9Link to Ensembl Protein Viewer:ENSP00000427401.3Re-query CCDS DB by Nucleotide ID:ENST00000513458Re-query CCDS DB by Protein ID:ENSP00000427401
Original member Current member NCBI NM_173829.4 NP_776190.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173829.4Link to Protein Sequence:NP_776190.1Re-query CCDS DB by Nucleotide ID:NM_173829Re-query CCDS DB by Protein ID:NP_776190Link to BLAST:NP_776190.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_776190.1 155 Q8N9Q2 155 100% 0 0

Chromosomal Locations for CCDS 34171.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 64724384 64724573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64728107 64728179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64741057 64741200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64754315 64754362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64768505 64768517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (468 nt):
ATGGCAGTCCCAGGTTGCAACAAGGACAGTGTCAGAGCAGGCTGTAAAAAATGTGGCTACCCTGGTCACC
TGACTTTTGAATGCCGCAATTTTCTCCGAGTAGACCCTAAAAGGGACATAGTTTTGGATGTCAGCAGTAC
AAGTAGTGAAGATAGCGATGAAGAGAATGAAGAACTGAATAAATTGCAGGCATTACAGGAAAAAAGAATA
AATGAAGAAGAGGAAAAGAAGAAAGAAAAAAGCAAAGAAAAAATCAAATTGAAAAAAAAAAGGAAAAGGT
CTTACTCATCCAGTTCCACTGAAGAGGACACTTCAAAACAAAAGAAACAAAAATATCAGAAGAAAGAAAA
GAAAAAAGAAAAAAAGAGTAAATCAAAAAAAGGGAAACATCACAAAAAGGAAAAAAAGAAGAGAAAAAAG
GAAAAGCATTCTTCTACACCTAATAGTTCTGAATTCTCCAGAAAGTAA

Translation (155 aa):
MAVPGCNKDSVRAGCKKCGYPGHLTFECRNFLRVDPKRDIVLDVSSTSSEDSDEENEELNKLQALQEKRI
NEEEEKKKEKSKEKIKLKKKRKRSYSSSSTEEDTSKQKKQKYQKKEKKKEKKSKSKKGKHHKKEKKKRKK
EKHSSTPNSSEFSRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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