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Report for CCDS9545.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9545.1 Public Homo sapiens 13 CHAMP1 24 110 108 CCDS HistoryNCBI Gene:283489Re-query CCDS DB by CCDS ID:9545.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9545.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361283.4 ENSP00000354730.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361283.4Link to Ensembl Protein Viewer:ENSP00000354730.1Re-query CCDS DB by Nucleotide ID:ENST00000361283Re-query CCDS DB by Protein ID:ENSP00000354730
Original member Current member EBI ENST00000645174.2 ENSP00000494031.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000645174.2Link to Ensembl Protein Viewer:ENSP00000494031.2Re-query CCDS DB by Nucleotide ID:ENST00000645174Re-query CCDS DB by Protein ID:ENSP00000494031
Original member Current member EBI ENST00000644294.2 ENSP00000495985.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000644294.2Link to Ensembl Protein Viewer:ENSP00000495985.2Re-query CCDS DB by Nucleotide ID:ENST00000644294Re-query CCDS DB by Protein ID:ENSP00000495985
Original member Current member EBI ENST00000643483.2 ENSP00000496699.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000643483.2Link to Ensembl Protein Viewer:ENSP00000496699.1Re-query CCDS DB by Nucleotide ID:ENST00000643483Re-query CCDS DB by Protein ID:ENSP00000496699
Original member Current member EBI ENST00000700527.1 ENSP00000515032.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000700527.1Link to Ensembl Protein Viewer:ENSP00000515032.1Re-query CCDS DB by Nucleotide ID:ENST00000700527Re-query CCDS DB by Protein ID:ENSP00000515032
Original member Current member EBI ENST00000700528.1 ENSP00000515033.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000700528.1Link to Ensembl Protein Viewer:ENSP00000515033.1Re-query CCDS DB by Nucleotide ID:ENST00000700528Re-query CCDS DB by Protein ID:ENSP00000515033
Original member Current member NCBI NM_001164144.3 NP_001157616.1 Accepted alive Link to Nucleotide Sequence:NM_001164144.3Link to Protein Sequence:NP_001157616.1Re-query CCDS DB by Nucleotide ID:NM_001164144Re-query CCDS DB by Protein ID:NP_001157616Link to BLAST:NP_001157616.1
Original member Current member NCBI NM_001164145.3 NP_001157617.1 Accepted alive Link to Nucleotide Sequence:NM_001164145.3Link to Protein Sequence:NP_001157617.1Re-query CCDS DB by Nucleotide ID:NM_001164145Re-query CCDS DB by Protein ID:NP_001157617Link to BLAST:NP_001157617.1
Original member Current member NCBI NM_032436.4 NP_115812.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032436.4Link to Protein Sequence:NP_115812.1Re-query CCDS DB by Nucleotide ID:NM_032436Re-query CCDS DB by Protein ID:NP_115812Link to BLAST:NP_115812.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157616.1 812 Q96JM3 812 100% 0 0
NP_001157617.1 812 Q96JM3 812 100% 0 0
NP_115812.1 812 Q96JM3 812 100% 0 0

Chromosomal Locations for CCDS 9545.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 114323843 114326281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2439 nt):
ATGGAAGCATTCCAGGAACTTCGTAAACCATCAGCACGTTTGGAGTGTGACCATTGCAGTTTCAGAGGCA
CAGACTATGAAAATGTACAAATCCATATGGGTACCATCCATCCAGAATTTTGTGATGAAATGGATGCTGG
TGGGCTAGGCAAAATGATATTTTACCAGAAAAGTGCAAAGTTATTTCACTGCCATAAATGCTTCTTCACC
AGCAAGATGTACTCTAATGTATACTATCACATCACATCCAAACATGCATCCCCAGACAAATGGAATGATA
AACCAAAAAATCAGTTGAACAAAGAAACAGATCCTGTGAAAAGCCCTCCTCTTCCTGAACACCAGAAAAT
ACCCTGCAATTCAGCAGAACCAAAATCCATACCTGCCCTTTCAATGGAAACACAGAAACTTGGTTCAGTT
TTGTCTCCAGAATCGCCAAAACCTACTCCTCTTACTCCCCTGGAGCCTCAGAAACCTGGCTCTGTTGTTT
CTCCTGAGCTACAGACACCTCTTCCTTCTCCTGAGCCTTCAAAACCTGCCTCTGTTTCTTCTCCTGAACC
TCCAAAATCAGTCCCTGTTTGTGAGTCTCAGAAACTTGCCCCTGTTCCTTCTCCAGAACCACAGAAACCT
GCCCCTGTATCTCCTGAGTCAGTAAAGGCTACTCTTAGTAATCCCAAACCCCAGAAGCAGTCTCATTTCC
CGGAAACATTGGGGCCACCTTCAGCCTCATCTCCAGAGTCACCAGTTCTAGCTGCTTCCCCAGAACCTTG
GGGACCATCCCCAGCTGCATCTCCAGAATCTCGGAAGTCAGCCCGGACTACCTCCCCTGAGCCAAGGAAG
CCATCCCCTTCAGAGTCTCCTGAACCTTGGAAGCCGTTCCCTGCTGTCTCCCCAGAGCCTAGGAGACCAG
CCCCCGCTGTGTCACCAGGCTCTTGGAAACCAGGGCCACCTGGGTCCCCTAGGCCTTGGAAATCCAATCC
TTCAGCATCATCAGGACCTTGGAAGCCAGCTAAACCTGCTCCATCTGTGTCTCCTGGACCTTGGAAACCA
ATTCCTTCTGTATCTCCTGGACCTTGGAAACCAACTCCATCTGTGTCTTCTGCATCCTGGAAATCTTCAT
CAGTCTCACCCAGCTCCTGGAAGTCTCCCCCTGCATCTCCTGAGTCATGGAAGTCTGGCCCACCAGAACT
CCGAAAGACAGCTCCCACGTTGTCTCCTGAACATTGGAAGGCAGTTCCCCCAGTGTCTCCAGAGCTTCGC
AAACCCGGCCCACCACTATCCCCAGAGATCCGTAGTCCAGCAGGATCTCCAGAGCTCAGAAAACCCTCAG
GGTCACCAGATCTTTGGAAGCTTTCTCCTGATCAGCGGAAAACTTCTCCTGCTTCACTTGATTTCCCTGA
GTCCCAGAAAAGTTCCCGTGGTGGTTCTCCTGATCTCTGGAAGTCTTCCTTTTTTATTGAGCCTCAGAAA
CCTGTCTTCCCTGAGACCCGAAAACCAGGTCCTTCTGGGCCATCTGAGTCCCCCAAAGCAGCCTCAGATA
TCTGGAAGCCTGTTCTCTCTATCGATACTGAGCCTAGAAAACCTGCCCTGTTTCCCGAGCCTGCCAAAAC
AGCCCCTCCTGCTTCTCCAGAAGCACGCAAACGTGCCCTTTTTCCAGAGCCCCGGAAGCATGCCCTTTTC
CCTGAACTCCCCAAATCTGCTCTATTCTCAGAATCACAGAAGGCTGTTGAGCTTGGTGATGAACTACAAA
TAGATGCCATAGATGATCAAAAATGTGATATTTTGGTTCAGGAAGAACTTCTAGCTTCACCTAAGAAACT
CTTAGAAGATACTTTATTTCCTTCCTCAAAGAAGCTCAAGAAAGACAACCAAGAGAGCTCAGACGCTGAG
CTTAGTAGTAGTGAGTACATAAAAACAGATTTGGATGCGATGGATATTAAGGGCCAGGAATCAAGCAGTG
ATCAAGAGCAGGTTGATGTGGAATCCATTGATTTTAGCAAAGAGAACAAAATGGACATGACTAGTCCAGA
GCAGTCTAGAAATGTGCTACAGTTTACTGAAGAAAAAGAAGCTTTTATCTCTGAAGAGGAGATTGCAAAA
TACATGAAGCGTGGAAAAGGAAAGTATTATTGCAAAATTTGTTGCTGTCGTGCTATGAAAAAAGGTGCTG
TTTTGCATCATTTGGTTAATAAGCATAATGTTCATAGCCCTTACAAATGCACAATCTGTGGAAAGGCTTT
TCTTTTGGAATCTCTCCTTAAAAATCATGTAGCAGCCCATGGGCAAAGTTTACTTAAATGTCCACGTTGT
AATTTTGAATCAAATTTCCCAAGAGGTTTTAAGAAACATTTAACTCATTGTCAAAGCCGGCATAATGAAG
AGGCAAATAAAAAGCTAATGGAAGCTCTTGAACCGCCACTGGAGGAGCAGCAAATTTGA

Translation (812 aa):
MEAFQELRKPSARLECDHCSFRGTDYENVQIHMGTIHPEFCDEMDAGGLGKMIFYQKSAKLFHCHKCFFT
SKMYSNVYYHITSKHASPDKWNDKPKNQLNKETDPVKSPPLPEHQKIPCNSAEPKSIPALSMETQKLGSV
LSPESPKPTPLTPLEPQKPGSVVSPELQTPLPSPEPSKPASVSSPEPPKSVPVCESQKLAPVPSPEPQKP
APVSPESVKATLSNPKPQKQSHFPETLGPPSASSPESPVLAASPEPWGPSPAASPESRKSARTTSPEPRK
PSPSESPEPWKPFPAVSPEPRRPAPAVSPGSWKPGPPGSPRPWKSNPSASSGPWKPAKPAPSVSPGPWKP
IPSVSPGPWKPTPSVSSASWKSSSVSPSSWKSPPASPESWKSGPPELRKTAPTLSPEHWKAVPPVSPELR
KPGPPLSPEIRSPAGSPELRKPSGSPDLWKLSPDQRKTSPASLDFPESQKSSRGGSPDLWKSSFFIEPQK
PVFPETRKPGPSGPSESPKAASDIWKPVLSIDTEPRKPALFPEPAKTAPPASPEARKRALFPEPRKHALF
PELPKSALFSESQKAVELGDELQIDAIDDQKCDILVQEELLASPKKLLEDTLFPSSKKLKKDNQESSDAE
LSSSEYIKTDLDAMDIKGQESSSDQEQVDVESIDFSKENKMDMTSPEQSRNVLQFTEEKEAFISEEEIAK
YMKRGKGKYYCKICCCRAMKKGAVLHHLVNKHNVHSPYKCTICGKAFLLESLLKNHVAAHGQSLLKCPRC
NFESNFPRGFKKHLTHCQSRHNEEANKKLMEALEPPLEEQQI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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