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Report for CCDS23481.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23481.1 Public Mus musculus 9 Rrp9 23 108 98 CCDS HistoryNCBI Gene:27966Re-query CCDS DB by CCDS ID:23481.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23481.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047721.9 ENSMUSP00000038580.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047721.9Link to Ensembl Protein Viewer:ENSMUSP00000038580.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000047721Re-query CCDS DB by Protein ID:ENSMUSP00000038580
Original member Current member NCBI NM_145620.4 NP_663595.1 Accepted alive Link to Nucleotide Sequence:NM_145620.4Link to Protein Sequence:NP_663595.1Re-query CCDS DB by Nucleotide ID:NM_145620Re-query CCDS DB by Protein ID:NP_663595Link to BLAST:NP_663595.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663595.1 475 Q91WM3 475 100% 0 0

Chromosomal Locations for CCDS 23481.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 106477348 106477434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106477671 106477753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106480696 106480805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106481156 106481223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106481313 106481354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106481760 106481886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106482912 106483036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106483119 106483211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106483557 106483657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106483747 106483881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106483966 106484028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106484211 106484356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106484440 106484519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106485077 106485150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106485252 106485345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1428 nt):
ATGTCGACCGCCGTGGCAACTCGTAAGCGGGCAAAGCCAGCTCCCGGGCCCGGGGCGGCTCCGGTGGCCG
GCAAGCGGCGGCGAAAGGTAGACTCTGCTGCGGACAGGGGCAAGTCCAAGGGTGGCGGCAAAATGAATGA
AGAGATTTCCAGCGATTCTGAGAGCGAGAGCTTGGCTCCAAGGAAAACAGAGGAAGAGGAGGAGGAAGAG
CTGGAAGAGACCGCACAGGAAAAGAAGCTACGCTTGGCCAAACTCTACCTTGAACAACTCAGGCAGCAAG
AGGAGGAGAAGGCTGAAGCCCGTGCATTCGAGGAGGATCAGGTGGCCGGGCGCTTGAAGGAGGATGTGCT
GGAGCAGAGAGGCAGGTTGCAGAAGTCGGTGGCCAAGGAGATCCAGGCCCCAGCTCCCACCGACATTCGA
GTTTTGCGGGGCCACCAGCTCTCCATTACGTGCTTGGTCATCACTCCTGATGACCTGGCCATCTTCTCCG
CCGCCAAAGACTGCACCATCATCAAGTGGAGTGTAGAGACTGGGCGGAAGCTGCATGTGATCCCTCGAGC
CAAGAAGGGTGCTCAGGGCCAGCCCGCAGGCCACAGCAGCCACGTCCTCTGCATGGCCATCTCCTCTGAT
GGCAAGTACCTCGCCTCTGGCGACCGCAGCAAGCTCATTCTCATTTGGGAGGCCCAGAGCTGCCAGCACC
TGTACACCTTCACGGGACACCGGGACGCTGTGTCGGGACTAGCCTTCCGAAAAGGTACCCACCAGCTCTA
CAGCACTTCCCACGACCGCTCTGTGAAGGTGTGGAATGCAGCCGAGAACTCCTACGTGGAGACGCTGTTC
GGGCACCAGGATGCTGTGGCTGCATTGGATGCCCTGAGCCGAGAGTGCTGTGTGACAGCTGGGGGCCGGG
ATGGGACCGTGCGTGTGTGGAAGATCCCCGAGGAGTCCCAGCTTGTCTTCTATGGCCACCAGGGTTCCAT
TGACTGTATCCATCTCATCAACGAGGAGCACATGGTGTCGGGCGCAGATGATGGCTCTGTGGCCTTGTGG
GGCCTCTCCAAGAAACGGCCACTCGCCCTCCAGCGCGAAGCTCATGGGCTTCACGGGGAGCCAGGCCTGG
AGCAACCCTTCTGGGTGTCATCCGTAGCCGCCCTGCTCAATACAGACCTGGTGGCCACAGGCTCCCATAA
TGCCCGTGTGCGACTTTGGCAGTGTGGAGAGGGCTTCCGGCAGCTTGACCCTCTCTGTGACATCCCCCTG
GTTGGTTTTATCAACAGCCTCAAGTTCTCCAGTGCTGGGGACTTCTTGGTGGCAGGCGTGGGACAGGAGC
ACAGGCTTGGCCGGTGGTGGAGGATCAAAGAGGCCCGGAACTCAGTCTGCATCATCCCACTCCGCAGGCT
CCCTGTGTCCCCTGTTGCCGGCTCCTGA

Translation (475 aa):
MSTAVATRKRAKPAPGPGAAPVAGKRRRKVDSAADRGKSKGGGKMNEEISSDSESESLAPRKTEEEEEEE
LEETAQEKKLRLAKLYLEQLRQQEEEKAEARAFEEDQVAGRLKEDVLEQRGRLQKSVAKEIQAPAPTDIR
VLRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVETGRKLHVIPRAKKGAQGQPAGHSSHVLCMAISSD
GKYLASGDRSKLILIWEAQSCQHLYTFTGHRDAVSGLAFRKGTHQLYSTSHDRSVKVWNAAENSYVETLF
GHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQLVFYGHQGSIDCIHLINEEHMVSGADDGSVALW
GLSKKRPLALQREAHGLHGEPGLEQPFWVSSVAALLNTDLVATGSHNARVRLWQCGEGFRQLDPLCDIPL
VGFINSLKFSSAGDFLVAGVGQEHRLGRWWRIKEARNSVCIIPLRRLPVSPVAGS


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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