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Report for CCDS52264.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52264.1 Public Mus musculus 7 Magel2 23 108 98 CCDS HistoryNCBI Gene:27385Re-query CCDS DB by CCDS ID:52264.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52264.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080403.6 ENSMUSP00000079265.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080403.6Link to Ensembl Protein Viewer:ENSMUSP00000079265.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000080403Re-query CCDS DB by Protein ID:ENSMUSP00000079265
Original member Current member NCBI NM_013779.2 NP_038807.4 Accepted alive Link to Nucleotide Sequence:NM_013779.2Link to Protein Sequence:NP_038807.4Re-query CCDS DB by Nucleotide ID:NM_013779Re-query CCDS DB by Protein ID:NP_038807Link to BLAST:NP_038807.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038807.4 1284 Q9QZ04 1284 100% 0 0

Chromosomal Locations for CCDS 52264.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 62377350 62381204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3855 nt):
ATGTCGCAGCTAAGTACGAATCTGGGGGATTCCAGCCCTCCGGAGTCCCCAGTGCCTGCAGTCCATAGCC
GCCCTACGGTTCTGATGCGGGCTCCGCCTGCTTCCTCCCGGGCTCCTCCTGTCCCCTGGGATCCACCTCC
AGTGGACTTGCAGGCTCCCATGGCTGCTTGGCAGGCTCCTCAACCTGCCTGGGAGGCTCCGGAGGGCCAG
CTGCCTGCCCCAGTGGCTCAGCTGGCCCAGCCTCCTGGTCTAGGGGCCCCAATGGTCCAGGCTCCACCGC
TCGGAGGGGGGATGGCCAAGCCTCCAACTCCTGGAGTCTTGATGGTCCATCAGCCCCCTCCGGGAGCCCC
CATGGCCCAGTCTTCAACTCCGGGAGTCCTGATGCTACATCCTTCTGTCACGGGGGCCCCTTTGGCTCAT
CCTCCTCCCCCAGGAACCCCGATGACACACCCTCCCGGGACCTCGATGGCGCACCCTCCTCCTCCTCCTC
CTCCCCCTCCTCCTCCTCCTCCTCCTGGGACCCCAATGACCCACCCACCTCCTCCTGGGACTCCGATGGG
TCACCATCCTCCTCCTGGGAACCCTATGACCCATCCTCCACCGGGGAACCCGATGGTGCATCCTCTCACT
CATGGAGCCCCGATGGTCCATGGGGGACCACATGGAACTCCAATGCCGCATGTTCCCATTACGGGGACAC
CGATAGCCCAGCAGCCAACTCCAGGAGTCCTGATGGCCCAGCAGCTGACACCGGGAGTCCTGATGGTCCA
GCCGCCTGCTCCGGGAGCTCCGATGGTCCAGCCACCTCCACAGGCTGCCTTGATGACCCAGCCTGCACCT
TCGATTACTCCGATGGCCAAGCCTCCAGGTCCTGGTGTCGTGATGATCCATCCTCCAGGTGCCAGAGGTC
CAATCATTCAGACTCCAGTATCAGGAGCACCAATGGCTCAGACAGTGCTGCCCCCTGGGCAGCCTCTGGC
CACTTGGGCCCCACAGGGTCAGCCTTTGATCCTACAAATCCAGTCTCAAGTCATAAGGGCTCCTCCACAG
GTTCCCTCTGTACCACAAGCCCCCCAGGTACAGCTGGCCACACCCCCAGGCTGGCAAGCCACCACACCCA
ACTGGCAGGTGACCCCCCAGGGGTGGCCAGCAACGCCTTTGACATGGCAGGCTACACAGGTGACCTGGCA
GGCCCCCACAATAGCCTGGCAGGCCACTCAACCTGGGCGCCAAGGGCACTCAACCATTCGTACTGGTCAC
ACACCCATTCGACCTGGACCAGCTCCATTGCTTCGCCAGATACCTCCTATGATCCGTCAGATCCAACCTG
TGATGAGGCAAGCCCCACCACTGATCCGACAGGTCCCTATCAGACCAGCTCCACATGGCATAGCAAGCCA
GCCTCAGCTGTGGCAGGTCCTGCCACCCCCACCTCCACTGCGGCAGGCTCCACAGGCTCGTCTACTGCTC
CCGAGGGTACCAGGAACAGGCCAGGTGTCTACAGTACCACCAGTTGCTCAGATACATTTGGTGCCACAGT
CAGGCCCACAGGTGCCCCAGACAGTACTGCCAGCCCAACTGTCTATCCCAATTCCTGTACCCCAGGCTGC
TGCTCAGTCTGCTCCCCGGACTGTGCATTGCCCACCCATCATCTGGCAGGCCCCCAAAGGCCAGGCCCCG
GTGCCACAGGAGCTCCCAGTGCCACAGGAGCTCCCGGTGCCACAGGAGCTCCCGGTGCCACAAGAGGTCC
CGGTTCCACAGGAGATCCCGGTGCCACAGGAGATCCCGGTGCCACAGGAGCTCCCGGTTCCACAGGAGCT
CCCGGTGCCACAGGAGCTCCCAGTGCCACAAGAGCTCCCGGTGCCACAGGAGCTCCCAGTGCCACAGGAG
CTCCCGGTGCCACAGGAGCTCCCGGTGCCACAGGAGCTCCCGGTGCCATTGGAGTTCCAGGAGGTACAGC
AGGCCCAGGCAGTGGGCTGGCGGGCACCCAAGGTACCTCCTCACTTCTGGCAGCCTGTGTCTGCCCAGGA
GGCCCAGGAGCAGGCCACTCAGATCGCCCATGTGGAGCAGCAGCAGCCCTTTCAGGGAGCTCCAGCCTCC
TCCAAGGCACTGCAAACTCAGCTGCCGACCCACCAGGCCCAAGCCTCTGGCTTGCAGGCAGAACTGCCTT
CAGTGCAGCTGCAGCCTTCTTGGCAAGGCCCACTGCCCATGTTGCAGGCCCAGCCTGGAGCCTCTGCCAC
ACTGGCAAACTTTCCCCGGGGCTCCACTCGATCACGTATGGCTCCATCAGGAGAACCTGGCCCCTCTTCT
CTAGAACCTCGGGGCCCTCCTAGGGAACGTAGGGCACCTGCAAGGGACAAAAAGGGTCCTCCAAAAGAGC
GCATGTTCATTGGTGCCACTTTCTGTGCTCCAAGGGGGGCATCAGCATCCAGGGCATACGTGCCAACTGC
CTGGAAAAACTTGCCTGCCACATCAGAGACCTTTCCTGCCACCTCAAGGGTCTTTCCATCTACCTCTCAT
TTCCAGCCTGCCTCTTCTAATGCCTTTAGAGGTCCATCTGCCGCCTCAGAGAGCCCAAAGTCACTGCCAT
TTGCTCTGCAGGATCCTTATGCCTGCGTAGAGGCCCTGCCTGCAGTTCCCTGGGTTCCGTATCCAGATGG
AAATGCCTCATCAGCATGTAAGTCAGTGCCTGCCATCTTGATGGTGGCAGCAGCTGCCCCCCAGGCAAGT
GCCACTGCTGCAGAGGCCTCTAAGTCTTCAGAGCCGCCAAGACGCCCCGGCAAAGCCACCAGGAAGAAGA
AGCATCTGGAACCCAAAGAAGACAACTGTGGCCACAGGCTCTCCTCACGTGACTGGCGGGGGCCCCGAAC
CTGGGGCAATCCCAGTCATTCTGACTGGGAGATTCAGAGGGCTATGCAGCTCCTGGGGGACCGGGAATCC
CTCTACACTCCGCAGGGCCTGAATGACTGGGGGTGCCCCAACACTTCTAGGATGCCAAGGAGCTTGGAGG
GCCCTAGCACTTCACGGGACCAGGAATTCTGTGGTGACTCGGGTGGGTCTCAGACATGGATGGCTTCTGA
GGTCCCAAGCGTCTCTCGGGGATCCAGTGCTGCTCAGGAGGACCCTGATAGGGAGAGTCAGCCCTTATCT
CCCTTAGATGAGAGAGCAAACGCTTTGGTGCAGTTTCTCTTGGTCAAAGACCAAGCCAAGGTGCCTGTCC
AGCTCTCGGAGATGGTAAATGTTGTCATCCGAGAATACAAAGACGACAGCTTAGACATCATCAACCGTGC
CAACACTAAGCTGGAGTGCACCTTTGGTTGTCAACTGAAGGAAGTTGACACCAAAACCCACACTTACATC
ATCGTCAACAAGATGGCGTACCCTCAGTGTAATTTGCTGGCATCCTATTTAGAGAGGCCAAAGTTCAGCC
TCCTGATGGTGGTCTTGAGCCTCATCTTTATGAAAGGCTACTGTATCAGGGAGAATCTGCTCTTTAGTTT
TCTGTTCCAGCTAGGGCTGGATGTCCAGGAGACAAGTGGTCTCTTCAGAATTACAAAGAAGCTCATCACC
AGTGTGTTTGTGAGACACAGGTACCTAGAGTACAGGCAAATCCCGTTCACTGAGCCTGCAGAATACGAGC
TTCTCTGGGGGCCCCGGGCATTCCTCGAAACCAACAGGGTGCACATCTTGAGATTTTTGGCCGCACTCTA
CGAGAACCAGCCCCAGATCTGGTCATGCCAGTACCTTGACTCACTGGCAGAGTTAGAATACAAGGACGCA
AATGCCGCCGCCGAAGAGTCCCATGACAGCGATGATGATGCCCACGACCCCACCAGCAGTCCCCATCCTC
ACTAA

Translation (1284 aa):
MSQLSTNLGDSSPPESPVPAVHSRPTVLMRAPPASSRAPPVPWDPPPVDLQAPMAAWQAPQPAWEAPEGQ
LPAPVAQLAQPPGLGAPMVQAPPLGGGMAKPPTPGVLMVHQPPPGAPMAQSSTPGVLMLHPSVTGAPLAH
PPPPGTPMTHPPGTSMAHPPPPPPPPPPPPPPGTPMTHPPPPGTPMGHHPPPGNPMTHPPPGNPMVHPLT
HGAPMVHGGPHGTPMPHVPITGTPIAQQPTPGVLMAQQLTPGVLMVQPPAPGAPMVQPPPQAALMTQPAP
SITPMAKPPGPGVVMIHPPGARGPIIQTPVSGAPMAQTVLPPGQPLATWAPQGQPLILQIQSQVIRAPPQ
VPSVPQAPQVQLATPPGWQATTPNWQVTPQGWPATPLTWQATQVTWQAPTIAWQATQPGRQGHSTIRTGH
TPIRPGPAPLLRQIPPMIRQIQPVMRQAPPLIRQVPIRPAPHGIASQPQLWQVLPPPPPLRQAPQARLLL
PRVPGTGQVSTVPPVAQIHLVPQSGPQVPQTVLPAQLSIPIPVPQAAAQSAPRTVHCPPIIWQAPKGQAP
VPQELPVPQELPVPQELPVPQEVPVPQEIPVPQEIPVPQELPVPQELPVPQELPVPQELPVPQELPVPQE
LPVPQELPVPQELPVPLEFQEVQQAQAVGWRAPKVPPHFWQPVSAQEAQEQATQIAHVEQQQPFQGAPAS
SKALQTQLPTHQAQASGLQAELPSVQLQPSWQGPLPMLQAQPGASATLANFPRGSTRSRMAPSGEPGPSS
LEPRGPPRERRAPARDKKGPPKERMFIGATFCAPRGASASRAYVPTAWKNLPATSETFPATSRVFPSTSH
FQPASSNAFRGPSAASESPKSLPFALQDPYACVEALPAVPWVPYPDGNASSACKSVPAILMVAAAAPQAS
ATAAEASKSSEPPRRPGKATRKKKHLEPKEDNCGHRLSSRDWRGPRTWGNPSHSDWEIQRAMQLLGDRES
LYTPQGLNDWGCPNTSRMPRSLEGPSTSRDQEFCGDSGGSQTWMASEVPSVSRGSSAAQEDPDRESQPLS
PLDERANALVQFLLVKDQAKVPVQLSEMVNVVIREYKDDSLDIINRANTKLECTFGCQLKEVDTKTHTYI
IVNKMAYPQCNLLASYLERPKFSLLMVVLSLIFMKGYCIRENLLFSFLFQLGLDVQETSGLFRITKKLIT
SVFVRHRYLEYRQIPFTEPAEYELLWGPRAFLETNRVHILRFLAALYENQPQIWSCQYLDSLAELEYKDA
NAAAEESHDSDDDAHDPTSSPHPH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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