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Report for CCDS30209.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30209.1 Public Mus musculus X Bcap31 23 108 98 CCDS HistoryNCBI Gene:27061Re-query CCDS DB by CCDS ID:30209.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30209.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002091.5 ENSMUSP00000002091.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002091.5Link to Ensembl Protein Viewer:ENSMUSP00000002091.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000002091Re-query CCDS DB by Protein ID:ENSMUSP00000002091
Original member NCBI NM_001313698.1 NP_001300627.1 Updated not alive Link to Nucleotide Sequence:NM_001313698.1Link to Protein Sequence:NP_001300627.1Re-query CCDS DB by Nucleotide ID:NM_001313698Re-query CCDS DB by Protein ID:NP_001300627
Current member NCBI NM_001313698.2 NP_001300627.1 Accepted alive Link to Nucleotide Sequence:NM_001313698.2Link to Protein Sequence:NP_001300627.1Re-query CCDS DB by Nucleotide ID:NM_001313698Re-query CCDS DB by Protein ID:NP_001300627Link to BLAST:NP_001300627.1
Original member NCBI NM_012060.5 NP_036190.2 Updated not alive Link to Nucleotide Sequence:NM_012060.5Link to Protein Sequence:NP_036190.2Re-query CCDS DB by Nucleotide ID:NM_012060Re-query CCDS DB by Protein ID:NP_036190
Current member NCBI NM_012060.6 NP_036190.2 Accepted alive Link to Nucleotide Sequence:NM_012060.6Link to Protein Sequence:NP_036190.2Re-query CCDS DB by Nucleotide ID:NM_012060Re-query CCDS DB by Protein ID:NP_036190Link to BLAST:NP_036190.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001300627.1 245 Q61335 245 100% 0 0
NP_036190.2 245 Q61335 245 100% 0 0

Chromosomal Locations for CCDS 30209.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 73686557 73686595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73687837 73687937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73688660 73688780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73689547 73689682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73706997 73707144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73712445 73712545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73714793 73714884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (738 nt):
ATGAGTTTGCAGTGGACTACAGTTGCCACCTTCCTCTACGCAGAGGTCTTTGCTGTGTTGCTTCTCTGCA
TTCCCTTCATTTCTCCAAAAAGATGGCAGAAGGTTTTTAAATCCCGGCTGGTGGAGTTGGTAGTGACCTA
TGGCAACACTTTCTTTGTGGTTCTCATCGTCATCCTTGTACTGTTGGTTATTGATGCTGTACGAGAGATC
CTGAAATACGATGATGTGACAGAAAAGGTGAACCTCCAGAACAATCCAGGTGCCATGGAGCACTTCCACA
TGAAGCTTTTCCGTGCTCAGAGGAATCTCTATATTGCTGGCTTTTCCTTGCTGCTGTCCTTCCTGCTTAG
ACGCCTGGTGACTCTCATCTCCCAGCAGGCCACACTGCTGGCCTCCAATGAAGCCTTTAAAAAGCAGGCA
GAAAGTGCCAGTGAGGCGGCCAAGAAATACATGGAGGAGAATGATCAGCTAAAGAAGGGAGCTGCCGAGG
ATGGAGACAAGTTGGATATTGGGAATACTGAAATGAAGTTAGAGGAGAACAAGAGCCTGAAGAATGACCT
GAGGAAGCTAAAAGATGAGCTGGCCAGCACCAAGAAAAAACTTGAGAAAGCTGAAAACGAGGCTCTGGCT
ATGCAGAAGCAGTCTGAGGGCCTTACCAAAGAATATGACCGCCTGCTAGAAGAACATGCCAAACTGCAGG
CATCAGTACGTGGTCCCTCAGTCAAGAAGGAGGAGTAA

Translation (245 aa):
MSLQWTTVATFLYAEVFAVLLLCIPFISPKRWQKVFKSRLVELVVTYGNTFFVVLIVILVLLVIDAVREI
LKYDDVTEKVNLQNNPGAMEHFHMKLFRAQRNLYIAGFSLLLSFLLRRLVTLISQQATLLASNEAFKKQA
ESASEAAKKYMEENDQLKKGAAEDGDKLDIGNTEMKLEENKSLKNDLRKLKDELASTKKKLEKAENEALA
MQKQSEGLTKEYDRLLEEHAKLQASVRGPSVKKEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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