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Report for CCDS19430.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19430.1 Public Mus musculus 5 Nup54 23 108 98 CCDS HistoryNCBI Gene:269113Re-query CCDS DB by CCDS ID:19430.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19430.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038514.14 ENSMUSP00000046540.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038514.14Link to Ensembl Protein Viewer:ENSMUSP00000046540.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000038514Re-query CCDS DB by Protein ID:ENSMUSP00000046540
Original member Current member NCBI NM_183392.2 NP_899248.1 Accepted alive Link to Nucleotide Sequence:NM_183392.2Link to Protein Sequence:NP_899248.1Re-query CCDS DB by Nucleotide ID:NM_183392Re-query CCDS DB by Protein ID:NP_899248Link to BLAST:NP_899248.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_899248.1 510 Q8BTS4 510 100% 0 0

Chromosomal Locations for CCDS 19430.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 92416210 92416338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92417453 92417563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92417781 92417900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92419517 92419624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92422482 92422575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92422977 92423031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92424274 92424470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92425623 92425810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92428100 92428326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92430801 92430953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92431039 92431122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92435004 92435070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1533 nt):
ATGGCTTTCAATTTTGGGGCTCCTTCGGGCACTTCGGGCACCTCTACAGCCACCGCGGCACCGGCGGGTG
GGTTTGGAGGATTTGGAACAACAACTACAACTGCAGGCTCTGCCTTCAGCTTTTCAGCCCCAACAAACAC
AGGCAGTACAGGCCTTCTCGGTGGCACTCAGAACAAAGGTTTTGGCTTTGGTACTGGTTTTGGCACAACG
ACGGGAACTGGCACTGGTTTAGGCACTGGCTTGGGAACCGGACTTGGATTTGGAGGATTTAATACCCAGC
AGCAGCAGCAGCAGCAGCAGACTTCTTTAGGTGGTCTCTTCAGTCAGCCGACCCAGGCTCCTGCACAGTC
TACCCAGCTCATCAACACTGCCAGCGCACTTTCTGCTCCAACGCTACTGGGGGATGAGAGAGACGCCATC
TTGGCAAAGTGGAACCAGTTGCAGGCCTTCTGGGGAACAGGAAAAGGATATTTCAATAATAACATTCCTC
CAGTGGAGTTTACCCAGGAGAATCCCTTTTGCCGGTTTAAGGCTGTAGGCTATAGTTGTATGCCCAATAA
TAAAGATGAAGATGGACTAGTAGTTTTAATTTTCAACAAAAAAGAAACAGATATTAGAAGCCAGCAACAG
CAATTGGTAGAATCATTGCATAAAGTTTTGGGAGGAAACCAGACCCTTACGGTCAATGTGGAGGGCATTA
AGACGTTGCCGGATGATCAGACGGAAGTTGTCATTTATGTTGTTGAGCGTTCTCCAAATGGCACCTCGAG
AAGAGTTCCAGCGACAACACTGTATGCCCACTTTGAGCAAGCCAACATTAAAGCCCAGCTGCAGCAGCTT
GGGGTGACCCTTTCTATGACCAGGACAGAGCTGTCTCCCGCTCAGATCAAGCAGCTCTTACAAAACCCTC
CCGCAGGTGTTGATCCTATTATTTGGGAACAGGCCAAGGTGGATAACCCAGACTCTGAAAAGTTAATTCC
TGTACCAATGGTGGGTTTCAAAGAATTGCTTCGAAGACTGAAGGTTCAAGATCAGATGACTAAGCAGCAT
CAGACCAGACTAGATATCATATCTGAAGATATTAGTGAACTGCAAAAAAATCAAACTACGACTATGGCCA
AAATAGCACAATACAAGAGGAAACTGATGGAGCTCTCCCACAGGACCTTACAGGTCCTAATCAAACAGGA
AATCCAGAGGAAGAGTGGCTATGCGATCCAGGCTGATGAAGAGCAGTTGCGGGTTCAGCTAGATACTATT
CAAGGGGAACTGAATGCGCCCACTCAGTTCAAAGGTCGGCTGAATGAGCTGATGTCCCAGATCAGGATGC
AGAATCATTTTGGAGCCGTGAAATCTGAAGAAAAGTACTACATAGATGCAGACCTGTTACGAGAAATCAA
GCAGCATTTGAAACAACAACAGGAAGGCCTTAGCCACTTGATTAGCATCATAAAAGATGACCTAGAAGAC
ATAAAACTGGTAGAACATGGATTGAATGAGACCATCCATAGCAGAGGCGGTGTCTTTAGCTGA

Translation (510 aa):
MAFNFGAPSGTSGTSTATAAPAGGFGGFGTTTTTAGSAFSFSAPTNTGSTGLLGGTQNKGFGFGTGFGTT
TGTGTGLGTGLGTGLGFGGFNTQQQQQQQQTSLGGLFSQPTQAPAQSTQLINTASALSAPTLLGDERDAI
LAKWNQLQAFWGTGKGYFNNNIPPVEFTQENPFCRFKAVGYSCMPNNKDEDGLVVLIFNKKETDIRSQQQ
QLVESLHKVLGGNQTLTVNVEGIKTLPDDQTEVVIYVVERSPNGTSRRVPATTLYAHFEQANIKAQLQQL
GVTLSMTRTELSPAQIKQLLQNPPAGVDPIIWEQAKVDNPDSEKLIPVPMVGFKELLRRLKVQDQMTKQH
QTRLDIISEDISELQKNQTTTMAKIAQYKRKLMELSHRTLQVLIKQEIQRKSGYAIQADEEQLRVQLDTI
QGELNAPTQFKGRLNELMSQIRMQNHFGAVKSEEKYYIDADLLREIKQHLKQQQEGLSHLISIIKDDLED
IKLVEHGLNETIHSRGGVFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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