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Report for CCDS40637.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40637.1 Public Mus musculus 9 Npat 23 108 98 CCDS HistoryNCBI Gene:244879Re-query CCDS DB by CCDS ID:40637.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40637.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035850.7 ENSMUSP00000048709.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035850.7Link to Ensembl Protein Viewer:ENSMUSP00000048709.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000035850Re-query CCDS DB by Protein ID:ENSMUSP00000048709
Original member NCBI NM_001081152.1 NP_001074621.1 Updated not alive Link to Nucleotide Sequence:NM_001081152.1Link to Protein Sequence:NP_001074621.1Re-query CCDS DB by Nucleotide ID:NM_001081152Re-query CCDS DB by Protein ID:NP_001074621
Current member NCBI NM_001081152.2 NP_001074621.1 Accepted alive Link to Nucleotide Sequence:NM_001081152.2Link to Protein Sequence:NP_001074621.1Re-query CCDS DB by Nucleotide ID:NM_001081152Re-query CCDS DB by Protein ID:NP_001074621Link to BLAST:NP_001074621.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074621.1 1420 Q8BMA5 1420 100% 0 0

Chromosomal Locations for CCDS 40637.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 53537152 53537188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53545168 53545286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53548910 53548970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53550038 53550110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53551598 53551638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53552250 53552474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53553885 53553972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53555057 53555141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53556388 53556479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53556568 53556655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53558125 53558221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53559082 53559207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53562042 53563676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53566717 53566832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53566916 53567024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53569887 53569947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53570047 53571178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53572571 53572648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4263 nt):
ATGCTGTTACCCTCGGATGTAGCCAGGCTGGTATTGGGTTACTTACAACAAGAAAACCTTACATCTACTT
GCCAGACTTTTATTTTGGAAAGTTCAAATTTAAAAGAATATGCAGAACACTGTACTGATGAAGGTTTTAT
TCCAGCCTGCTTACTGTCCTTATTTGGAAAAAACTTGACCACAATTTTGAATGAGTATGTAGCTATGAAA
GCAAAAGAAACATCAAATGATGTCCCAACAATAATGTCATCTCTATGGAAGAAGCTAGACCACACACTCT
CTCAGATCAGGAGCATGCACAGTTCTCCAGGGTTTGCTGCCCATCAGAGAGCTCGAACGAGAAATGGAAT
TGCAGAAATCAAGCGGCAGCGATGGCTAGCATCTCAGGCAGCTCCCGTCAGTTCAGAGTTACTGGTTTTA
CCTTATGCTTCAGGACAGTTTACCACTTCTCCTTTGGTAGCCACACAAGCTGTTAAGCCAACTGGCCCAA
TTTCAACTCCAGTGAGGTCAAATATTGTGGTGGTCAACCAGTCACAGCCACAAAGTACTGTAACTAATAC
AGCTGGAGAGTCTTTGAATATCATTCCTGGTCCTCAGGAAAGGAAAACTCAAACCAGTTTAATGTCTCCT
GGTAGACGTAAAAGTGAATCACAAAAGAAGAGTCTCACATCATCTGGACCGCATTCATCAAGGAATTTTC
AGGATCCAAATGCATTTGCAGTAGAAAAACAAATGGTTATTGAAAATGCAAGAGAGAAAATATTAAGCAA
CAAATCTCTTCAAGAAAAACTAGCAGAAAACATAAATAAGTTTTTGACTAGTGATAGTAGTGTTGCTCAA
GTACCTAAGCAGACAGACAGCAACCCGACAGAGCCAGAAACGTCAATTGATGAACTGCTAGGCCTTCCGA
GTGAAATCCATATGTCTGAAGAAGCCATACAAGATATTTTGGAGCAGACAGAATCAGACCCCGCCTTTCA
GGCACTCTTTGATCTTTTTGACTATGGTAAAACAAAGAACAATAAAAATATGCCACAAATCTCTAGTCAA
CCTATGGAGACTAATTCTAATATAGTCTTGCCTGAAGAAACTAATCTAACAATTAAAAGTTCTTTTGAAA
CTGAAGAATCAGATGGGCAGTCTGGTCAGCCTCCATTTTGTACATCCTATCAAAATGAAGATGTATTATT
AAATGATTTGAAGAGTGGCAACAGCCATGATGTTCTTCCACAGGAATCCCAGGAAAACTTCTCTCAGATA
AGCTCTAACATTCAAAAAAAGACCTTTAAAACAGCCATACCTGCTGAACAGAAGTGTGCCCTTGACATTA
CCCTTGAGTCTGTGTCTAACTTGAGTGACTTTAACCAAAGAGGAAGCTCTGCTGAATGTAATGAACATTG
TTCTGAGTTATTCGCCAGTCAGATACCCACTGAAGCTGAAGTGGCTGTGGGTGAGAAGAATTCTTTGTCT
GCAGATATACTGAGTCAATCTCAGTATCAGCCTGATCAGCCCAGTGTGCCAGTGACTTCATTTGTGTCTC
TTGGTGGTGAGACCAATGACAAAAACTTAGTTCTCTCTGGGAAAAATTCCCAGCTTTTGTCCCAAAGTAC
TCCACTAACTACAAAGCCATCAAAAAGCCAACTTTGTGAAAATTCTAACAATATAATAAAAGTTAAAACT
AATCCTCAGGCTTCTGAGTCAGCAGACTCTAGTGAAACTGCAAACAGGAAAACTGAGACTAACACTGTAT
CGCCAGCTGCTGCACAGCCACAAGCAGATTGCCAAGATAACTCTCCACTGCAGAGCAAACCACCTCCTGG
GATTGGTGAAAGTTTGGGTGTAAATGTGACTGAGAAAATAGAAATTCATCTTGAAGAACCAGCCCCTTCA
GATAAACAGCTCTCTAATGATGCAGCGTCTGTTGACTTAAATCCTACGGAAAGCAAGACGGAGCCACTTC
AGTCTGCCAGTGCTCAAGAGCCCGAGCCCCCTTCTGTGAAAGATGGAGATACTATTTTTCTCTCTTTGAG
TGAACATAACAGCTGTGAAGAAGTTGCACTGGTTCTTGGAGAAGGTAATCCTGTAAAAAATAATAATTCG
CTTTCTTCAGAATCTGGTGGTTCAGTGGGAGTCTCTCCTGAGACCCAAAATACTGATGGTAAAACTAGCA
ACTCAACAGAGGTAGATGCATCAAGTATTGTCTCTCTCAAAATTATCATTAGTGATGATCCATTTGTTTC
CTCAGATGCAGAGCTTAACAGTGCTGTGTCTAGTATCAGTGGAGAAAACTTACCAACGATAATTCTGTCT
TCTAAATCTCCTGCCAAAAATGCAGAATTTGTTACATGCCTATCTTCAGAAGAAACTGCAAGTGCTGTTG
TATCTGTTGAAGTAGGGGATTCCGGCTCCATGGAGCAGAACCTTTTAGTGCTCAAACCTGAGGAGCCCAT
GGTAAACAACACTCAGAATGAAGATGGCATTGCTTTTTCAGCCAATGTTGCACCATGTGTTCCTAAGGAC
GGAGGATACATACAGTTGATGCCTACCACAAGCACAGCGTTTGGCAATTCAAGTAACATTCTGATAGCTA
CCTGTATGACTGATTCAACAGCCTTGGGACCAACTGTCAGTCAGTCTAATGTAGTGGTATTGCCTGGGAG
TTCTGCACCTATGACTGCACAGCCTCCTCAACAGCAGTTACAGACACCACCTAAATCTAACAGTGCGTTT
GCTGTCAGCCAAGCTGTGTCGCCAAACTTTTCACAAGGATCTGCCATCATAATTGCTTCTCCAGTCCAGC
CTGTACTTCAAGGAATGGTGGGAATGATACCTGTGTCTGTAGTTGGACAGAATGGAAATACATTCTCTAC
TCCTCCTCAGCAGGTCCTTCATATGCCTTTAGCAGCACCTGTTTGTAATAGAAGTATCGCTCAGCTCCCC
ATTCCTCAAAAATCCCAGAAGGCTCAGGGACTCAGAAACAAGCTTATTACAGGAAAACAGGTAAATAATT
TGACAAACTTGTCCAGTCTTTCAGAAGCATGTCATACGCAGAGAACTGAAGCTTCTGATAAGAATATAGC
CACTGAACTTGGGAAAAAAATGGAAGACACCACGATTTCCCTCTCAGGAGAGAGGGTAGCTCCTCCCAGC
AAGCCATTTGAAAGTCATAGGCGGGTGCTTTGTTTCGATAGTACTGTTTCTTCTGTTGCAAATACACAGG
GGTCACTGTATAAGATGACCTCCGAAAACAAAGAAAAGAAGGAAGCATCCTTTTCTCATCTTGACTCACC
CATTCTGTCCTCTACCTTAAAACCACCTCCTAATAACGCCATCAAAAGAGAGAGAGAGAAAACCGTGCCC
AAGATTTTATCTAAATCAGAAACTGCCTCTAGTCGACACACCACTGTGAAAGAAGTTCAGTCTGAAAAGA
AAGTTTCCCCCACAGAAGTGGCCCTTGAGTCTCTCCATAAAGCAACAGCTAACAAGGAGAATGAATTGTG
CGGTGATGGGGAAAGGCCGAAGAATGCAGACACCTCAAAACTGCCTGGTGGGCAGCAGAATGGGAGCTTG
AGGAACGAAAAAGCCATAGCCTCGCTGCAGGAATTGACCAAAAAACAAGCCACACCCTCAAACAATAAAA
ATGCCACTTCTGTAGGTGGAACTGTGAAGGATCAAAAACAAGAGCAGAGTAAACCTGCCAGTTCTTTAAT
TGGGGCAGAAATACTGCAGGATGTTCCCATCCACAGCCCAGCCAATAGGAGTGCCGATACTGACTTGCCA
GTACCCCGGACCCCTGGCTCAGGAGCAGGGGAAAAGCATAAAGAAGAGCCTAGTGACAGTATGAAGGCCC
CCGCTAGTAGACGCTGTGGTGAAGAAGGCAGCATGCCAAGAGTAATGATCCCTCCTGTCACTGCAGACTT
GCCTGCCTGCAGCCCAGCCAGTGAAACAGGCAGTGAAAACAGTGTGAGCATGGCTGCCCACACGCTCATG
ATTCTCTCCAGAGCAGCAATTGCTAGGACTACAGCAACTCCTCTAAAAGATAACACGCAGCAGTTTAGAA
CATCTTCAAGGAGCACTACAAAGAAACGGAAAATTGAGGAATTAGATGAGTGTGAGAGAAACTCCCGCAC
GTCTGGTAAAAATCTTGCTAATTCATCAGTACCAATGAAAAAGAAGAAAATCAAGAAAAAGAAGCTACCT
AGTTCATTTCCAGCAGGAATGGATGTGGACAAATTCTTGCTCTCATTGCATTATGATGAGTGA

Translation (1420 aa):
MLLPSDVARLVLGYLQQENLTSTCQTFILESSNLKEYAEHCTDEGFIPACLLSLFGKNLTTILNEYVAMK
AKETSNDVPTIMSSLWKKLDHTLSQIRSMHSSPGFAAHQRARTRNGIAEIKRQRWLASQAAPVSSELLVL
PYASGQFTTSPLVATQAVKPTGPISTPVRSNIVVVNQSQPQSTVTNTAGESLNIIPGPQERKTQTSLMSP
GRRKSESQKKSLTSSGPHSSRNFQDPNAFAVEKQMVIENAREKILSNKSLQEKLAENINKFLTSDSSVAQ
VPKQTDSNPTEPETSIDELLGLPSEIHMSEEAIQDILEQTESDPAFQALFDLFDYGKTKNNKNMPQISSQ
PMETNSNIVLPEETNLTIKSSFETEESDGQSGQPPFCTSYQNEDVLLNDLKSGNSHDVLPQESQENFSQI
SSNIQKKTFKTAIPAEQKCALDITLESVSNLSDFNQRGSSAECNEHCSELFASQIPTEAEVAVGEKNSLS
ADILSQSQYQPDQPSVPVTSFVSLGGETNDKNLVLSGKNSQLLSQSTPLTTKPSKSQLCENSNNIIKVKT
NPQASESADSSETANRKTETNTVSPAAAQPQADCQDNSPLQSKPPPGIGESLGVNVTEKIEIHLEEPAPS
DKQLSNDAASVDLNPTESKTEPLQSASAQEPEPPSVKDGDTIFLSLSEHNSCEEVALVLGEGNPVKNNNS
LSSESGGSVGVSPETQNTDGKTSNSTEVDASSIVSLKIIISDDPFVSSDAELNSAVSSISGENLPTIILS
SKSPAKNAEFVTCLSSEETASAVVSVEVGDSGSMEQNLLVLKPEEPMVNNTQNEDGIAFSANVAPCVPKD
GGYIQLMPTTSTAFGNSSNILIATCMTDSTALGPTVSQSNVVVLPGSSAPMTAQPPQQQLQTPPKSNSAF
AVSQAVSPNFSQGSAIIIASPVQPVLQGMVGMIPVSVVGQNGNTFSTPPQQVLHMPLAAPVCNRSIAQLP
IPQKSQKAQGLRNKLITGKQVNNLTNLSSLSEACHTQRTEASDKNIATELGKKMEDTTISLSGERVAPPS
KPFESHRRVLCFDSTVSSVANTQGSLYKMTSENKEKKEASFSHLDSPILSSTLKPPPNNAIKREREKTVP
KILSKSETASSRHTTVKEVQSEKKVSPTEVALESLHKATANKENELCGDGERPKNADTSKLPGGQQNGSL
RNEKAIASLQELTKKQATPSNNKNATSVGGTVKDQKQEQSKPASSLIGAEILQDVPIHSPANRSADTDLP
VPRTPGSGAGEKHKEEPSDSMKAPASRRCGEEGSMPRVMIPPVTADLPACSPASETGSENSVSMAAHTLM
ILSRAAIARTTATPLKDNTQQFRTSSRSTTKKRKIEELDECERNSRTSGKNLANSSVPMKKKKIKKKKLP
SSFPAGMDVDKFLLSLHYDE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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