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Report for CCDS7403.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7403.1 Public Homo sapiens 10 IFIT5 24 110 108 CCDS HistoryNCBI Gene:24138Re-query CCDS DB by CCDS ID:7403.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7403.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371795.5 ENSP00000360860.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371795.5Link to Ensembl Protein Viewer:ENSP00000360860.4Re-query CCDS DB by Nucleotide ID:ENST00000371795Re-query CCDS DB by Protein ID:ENSP00000360860
Original member Current member NCBI NM_012420.3 NP_036552.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012420.3Link to Protein Sequence:NP_036552.1Re-query CCDS DB by Nucleotide ID:NM_012420Re-query CCDS DB by Protein ID:NP_036552Link to BLAST:NP_036552.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036552.1 482 Q13325-1 482 100% 0 0

Chromosomal Locations for CCDS 7403.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 89414799 89414803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 89417205 89418648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1449 nt):
ATGAGTGAAATTCGTAAGGACACCTTGAAGGCCATTCTGTTGGAGTTAGAATGTCATTTTACATGGAATT
TACTTAAGGAAGACATTGATCTGTTTGAGGTAGAAGATACAATTGGGCAACAGCTTGAATTTCTTACCAC
AAAATCTAGACTTGCTCTTTATAACCTATTGGCCTATGTGAAACACCTAAAAGGCCAAAATAAAGACGCC
CTTGAGTGCTTGGAACAAGCAGAAGAAATAATCCAGCAAGAACACTCAGACAAAGAAGAAGTACGAAGCC
TGGTCACTTGGGGAAACTATGCCTGGGTGTATTATCACATGGACCAGCTTGAAGAAGCTCAGAAGTATAC
AGGTAAGATAGGGAATGTCTGTAAGAAATTGTCCAGTCCTTCTAACTACAAGTTGGAGTGTCCTGAGACT
GACTGTGAGAAAGGCTGGGCACTCTTGAAATTTGGAGGAAAGTATTATCAAAAGGCTAAAGCGGCTTTTG
AGAAGGCTCTGGAAGTGGAGCCTGACAATCCAGAATTTAACATCGGCTATGCTATCACAGTGTATCGGCT
GGATGATTCTGATAGAGAAGGGTCTGTAAAGAGCTTTTCTCTGGGGCCTTTGAGAAAGGCTGTTACCCTG
AACCCAGATAACAGCTATATTAAGGTTTTTCTGGCACTGAAGCTTCAAGATGTACATGCAGAAGCTGAAG
GGGAAAAGTATATTGAAGAAATCCTGGACCAAATATCATCCCAGCCTTACGTCCTTCGTTATGCAGCCAA
GTTCTATAGGAGAAAAAATTCCTGGAACAAAGCTCTCGAACTTTTAAAAAAGGCCTTGGAGGTGACACCA
ACTTCTTCTTTCCTGCATCACCAGATGGGACTTTGCTACAGGGCACAAATGATCCAAATCAAGAAGGCCA
CACACAACAGACCTAAAGGAAAGGATAAACTAAAGGTTGATGAGCTGATTTCATCTGCTATATTTCATTT
CAAAGCAGCCATGGAACGAGACTCTATGTTTGCATTTGCCTACACAGACCTGGCCAACATGTACGCTGAA
GGAGGCCAGTATAGCAATGCTGAGGACATTTTCCGGAAAGCTCTTCGTCTGGAGAACATAACCGATGATC
ACAAACATCAGATCCATTACCACTATGGCCGCTTTCAGGAATTTCACCGTAAATCAGAAAATACTGCCAT
CCATCATTATTTAGAAGCCTTAAAGGTCAAAGACAGATCACCCCTTCGCACCAAACTGACAAGTGCTCTG
AAGAAATTGTCTACCAAGAGACTTTGTCACAATGCTTTAGATGTGCAGAGTTTAAGTGCCCTAGGGTTTG
TTTACAAGCTGGAAGGAGAAAAGAGGCAAGCTGCTGAGTACTATGAGAAGGCACAAAAGATAGATCCAGA
AAATGCAGAATTCCTGACTGCTCTCTGTGAGCTCCGACTTTCCATTTAA

Translation (482 aa):
MSEIRKDTLKAILLELECHFTWNLLKEDIDLFEVEDTIGQQLEFLTTKSRLALYNLLAYVKHLKGQNKDA
LECLEQAEEIIQQEHSDKEEVRSLVTWGNYAWVYYHMDQLEEAQKYTGKIGNVCKKLSSPSNYKLECPET
DCEKGWALLKFGGKYYQKAKAAFEKALEVEPDNPEFNIGYAITVYRLDDSDREGSVKSFSLGPLRKAVTL
NPDNSYIKVFLALKLQDVHAEAEGEKYIEEILDQISSQPYVLRYAAKFYRRKNSWNKALELLKKALEVTP
TSSFLHHQMGLCYRAQMIQIKKATHNRPKGKDKLKVDELISSAIFHFKAAMERDSMFAFAYTDLANMYAE
GGQYSNAEDIFRKALRLENITDDHKHQIHYHYGRFQEFHRKSENTAIHHYLEALKVKDRSPLRTKLTSAL
KKLSTKRLCHNALDVQSLSALGFVYKLEGEKRQAAEYYEKAQKIDPENAEFLTALCELRLSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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