NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS39555.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39555.1 Public Mus musculus 6 Tpra1 23 108 98 CCDS HistoryNCBI Gene:24100Re-query CCDS DB by CCDS ID:39555.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39555.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055022.14 ENSMUSP00000063042.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055022.14Link to Ensembl Protein Viewer:ENSMUSP00000063042.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000055022Re-query CCDS DB by Protein ID:ENSMUSP00000063042
Original member Current member EBI ENSMUST00000204765.2 ENSMUSP00000145050.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000204765.2Link to Ensembl Protein Viewer:ENSMUSP00000145050.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000204765Re-query CCDS DB by Protein ID:ENSMUSP00000145050
Original member Current member EBI ENSMUST00000203185.2 ENSMUSP00000145168.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000203185.2Link to Ensembl Protein Viewer:ENSMUSP00000145168.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000203185Re-query CCDS DB by Protein ID:ENSMUSP00000145168
Original member NCBI NM_011906.2 NP_036036.2 Updated not alive Link to Nucleotide Sequence:NM_011906.2Link to Protein Sequence:NP_036036.2Re-query CCDS DB by Nucleotide ID:NM_011906Re-query CCDS DB by Protein ID:NP_036036
Current member NCBI NM_011906.3 NP_036036.2 Accepted alive Link to Nucleotide Sequence:NM_011906.3Link to Protein Sequence:NP_036036.2Re-query CCDS DB by Nucleotide ID:NM_011906Re-query CCDS DB by Protein ID:NP_036036Link to BLAST:NP_036036.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036036.2 369 Q99MU1 369 100% 0 0

Chromosomal Locations for CCDS 39555.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 88907957 88908072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88908184 88908316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88909290 88909376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88909508 88909580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88909681 88909760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88910151 88910261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88910341 88910401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88910548 88910650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88910797 88910877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88911683 88911947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1110 nt):
ATGGCCAGCCTGCAGGAGGCCAATGGAAGCACAGCGTGGCCACCGCCCACAGCATCCAATATCAGTGAGC
CCCACCAGTGCCTGCTGCTGCTATATGAGGATATTGGCTCCTCCAGGGTCCGGTACTGGGACCTCCTGCT
GCTCATTCCCAATGTGCTCTTCTTCATCTTCCTGCTCTGGAAGCTTCCCTTAGCTCGGGCCAAGATCCGT
GTCACCTCCAGCCCCATTTTTATCACCTTCTACATCCTGGTGTTTGTGGTAGCCCTGGTAGGCATTGCCA
GGGCTGTGGTTTCTATGACAGTCAGCGCCTCTGATGCTGCGACAGTTGCTGACAAGATCCTGTGGGAAAT
CACCCGCTTCTTCCTGCTGGCCATTGAGCTGAGTGTGATCATCCTGGGTCTTGCCTTTGGTCACCTAGAG
AGCAAGTCCAGCATCAAGCGGGTGCTGGCTATCACCACAGTATTGTCTCTGGCCTACTCAGTCACCCAGG
GGACCTTGGAGATCCTGTACCCTGACTCCCATCTTTCAGCTGAGGATTTCAACATCTATGGCCATGGTGG
CCGGCAGTTCTGGCTCGTCAGCTCTTGCTTTTTCTTCCTGGTCTACTCACTGGTGGTAATTCTCCCCAAG
ACCCCACTGAAGGAGCGTGTATCCCTGCCCTCACGGAGGAGTTTCTACGTGTATGCAGGCATCCTGGCCA
CACTCAACCTGCTGCAGGGTTTGGGGAGTGCTCTGCTCTGCGCTAACATCATTGTGGGGCTCTGCTGTGT
AGATGCCACCACCTTCCTGTACTTCAGCTTCTTTGCACCACTCATCTATGTGGCCTTCCTCCGTGGCTTC
TTTGGCTCTGAACCCAAGATCCTTTTCTCTTACAAATGCCAAGTGGACGAGGCTGAAGAGCCAGACATGC
ACCTGCCGCAGCCCTACGCTGTGGCCCGGCGCGAGGGCATAGAGTCTGCAGGACCTGCCTGCGCCTCTGC
CGCCAACTACTCCAGCACACAGTTTGACTCTGCTGGGGTGGCCTACTTAGATGACATTGCCTCCATGCCC
TGCCACACGGGCAGCATCAACAGCACAGACAGCGAGCGCTGGAAAGCCATCAATGCCTGA

Translation (369 aa):
MASLQEANGSTAWPPPTASNISEPHQCLLLLYEDIGSSRVRYWDLLLLIPNVLFFIFLLWKLPLARAKIR
VTSSPIFITFYILVFVVALVGIARAVVSMTVSASDAATVADKILWEITRFFLLAIELSVIILGLAFGHLE
SKSSIKRVLAITTVLSLAYSVTQGTLEILYPDSHLSAEDFNIYGHGGRQFWLVSSCFFFLVYSLVVILPK
TPLKERVSLPSRRSFYVYAGILATLNLLQGLGSALLCANIIVGLCCVDATTFLYFSFFAPLIYVAFLRGF
FGSEPKILFSYKCQVDEAEEPDMHLPQPYAVARREGIESAGPACASAANYSSTQFDSAGVAYLDDIASMP
CHTGSINSTDSERWKAINA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH