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Report for CCDS17454.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17454.1 Public Mus musculus 3 Insrr 23 108 98 CCDS HistoryNCBI Gene:23920Re-query CCDS DB by CCDS ID:17454.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17454.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029711.8 ENSMUSP00000029711.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029711.8Link to Ensembl Protein Viewer:ENSMUSP00000029711.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000029711Re-query CCDS DB by Protein ID:ENSMUSP00000029711
Original member Current member EBI ENSMUST00000107582.2 ENSMUSP00000103208.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107582.2Link to Ensembl Protein Viewer:ENSMUSP00000103208.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107582Re-query CCDS DB by Protein ID:ENSMUSP00000103208
Original member Current member NCBI NM_011832.2 NP_035962.2 Accepted alive Link to Nucleotide Sequence:NM_011832.2Link to Protein Sequence:NP_035962.2Re-query CCDS DB by Nucleotide ID:NM_011832Re-query CCDS DB by Protein ID:NP_035962Link to BLAST:NP_035962.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035962.2 1300 Q9WTL4 1300 100% 0 0

Chromosomal Locations for CCDS 17454.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 87797424 87797508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87800338 87800889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87802379 87802682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87802769 87802911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87803073 87803217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87804004 87804218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87804399 87804525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87808571 87808809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87809277 87809444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87809533 87809728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87809893 87809934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87810013 87810233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87810431 87810567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87810648 87810810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87810939 87811044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87811582 87811634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87812953 87813182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87813563 87813673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87813781 87813940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87814186 87814315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87814448 87814582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87815135 87815375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3903 nt):
ATGGCAGTGCCTGCTCTGTGGCCCTGGGGAGTACACTTGCTTATGAGCCTGCTGTCCTTGGGATCTGGCC
TGGACACACTAGAGGTGTGCCCCAGCCTGGATATCCGCTCGGAGGTGACCGAGCTCCGTCGGCTGGAGAA
CTGCAGTGTGGTGGAGGGTCACCTGCAGATCCTTCTTATGTTTGCTGCCACTGGAGAGGATTTCCGAGGC
CTCAGCTTTCCTCGCCTTACCCAGGTGACTGACTACCTGCTGTTGTTCCGAGTCTATGGCCTGGAGAGCC
TTCGAGACCTCTTCCCCAACCTCACTGTGATCCGAGGCACCCGGCTCTTCCTGGGCTACGCACTCATTAT
CTTTGAGATGCCCCACCTACGGGACGTCGGGCTGCCGTCGCTTGGGGCCGTGCTGCGTGGGGCCGTGCGT
GTGGAGAAGAACCAGGAACTTTGCCATCTCTCCACCATTGACTGGGGTCTGCTGCAGCCTGCACCTGGTA
CCAACCACATTGTAGGAAACAAGCTGGGCGAGGAGTGTGCAGACGTGTGCCCCGGTGTGCTGGGAGCTGC
TGGTGAGCCCTGTTCGAGAACCACCTTCAGCGGGCGCACTGACTACAGGTGCTGGACGTCCAGCCACTGT
CAGAAAGTGTGTCCCTGCCCCCGAGGGATGGCCTGCACAGCAGGCGGTGATTGCTGCCACAGTGAGTGTC
TGGGGGGCTGCAGCCAGCCTGAAGACCCTCGAGCCTGTGTAGCTTGCCGCCACCTCTACTTCCAAGGAGT
CTGCCTCCGAGCCTGCCCTCCGGGCACCTACCAATATGAGTCCTGGCGCTGTGTCACCGCGGAGCTCTGC
GCTCATCTGCGTGAGGTTCCTGGACTTGCCACCACCTTCGGCATCTACGAGGGCAGCTGCCTAGCTCAGT
GCCCTCCAGGCTTCACCCGCAATGGCAGCAGCATTTTCTGCCATAAGTGTGAGGGCCTGTGCCCCAAAGA
GTGCAAGGTTGGGACAAAGACCATCGACTCTGTCCAAGCCACACAGGACCTGGTGGGCTGCACCCACGTG
GAGGGAAACCTCATCCTCAACCTTCGCCAAGGCTACAATCTGGAGCCAGAGCTTCAACGCAACCTGGGTC
TGGTGGAGACCATCACTGGCTTCCTCAAAATCAAGCACTCTTTTGCACTCGTGACCCTGGGCTTTTTCAA
GAACCTCAAACTAATCCGGGGAGATTCCATGGTGGATGGGAATTACACTCTCTACGTATTGGACAACCAG
AACCTGCAACAGTTGGGATCCTGGGTGACCGCGGGGCTCACCATTCCCGTGGGCAAAATATACTTCGCCT
TCAACCCACGCCTCTGCTTGGAGCACATATACCAACTGGAGGAGGTGACGGGAACCAGAGGTCGGCAGAG
CAAGGCTGAAATCAACCCCCGGACCAATGGAGATCGGGCTGCCTGTCAGACTCGCACTCTACGTTTTGTG
TTCAACCTGACGGAGGAAGACCGCATCCTCCTGCGCTGGGAGCGCTATGAGCCACTGGAGGCCCGTGACC
TGCTCAGCTTCATTGTCTATTACAAGGAGTCCCCATTTCAGAATGCCACAGAACACGTGGGTCCAGATGC
CTGTGGAACCCAGAGCTGGAACCTGTTGGATGTGGAACTACCCCTCAGCCGCACCCAGGAACCAGGGGTA
ACCCTGGCCCCCCTTAAGCCCTGGACACAGTATGCTGTGTTTGTGCGGGCCATCACACTGACCACCGCTG
AGGACAGTCCCCATCAGGGAGCCCAGAGCCCCATTGTCTACCTGCGAACATTGCCTGCTGCACCCACGGT
GCCCCAAGATGTCATCTCCACCTCCAACTCCTCTTCCCACCTCCTGGTGCGCTGGAAGCCACCGGTCCAG
CGCAATGGAAACATCACCTACTACCTGGTGCTGTGGCAGCGCCTGGCGGAGGACGGTGACCTCTACATCA
ATGACTACTGCCACCGCGGTCTGCGGCTGCCCACCAGCAGCCACGACACACGCTTCGACCGTGAAGACCC
GGCGCTGGAGGCTGAGCCGGAACAAGGCTGCTGTCCTTGCCAACACTCACCTCCTGGGCAGGCCCTGCCT
GCACTGGAGGCTCAAGAGGTCACCTTCCAGAAAAAATTTGAAAACTTCCTACACCATGCCATCACCATCC
CCAAGGCTCCATGGAAAGTGACATCCATCAACAAGAACCCCCAAAGGGATTCGGAGAGGCACCGCAGGGA
AGCTGGACTTCTCAGACTAGGGAAAAACAACTCGGATTTTGAGATTCAAGAGGACAAGGTTCCCCGGGAG
CGAGCGATATTGAGCGGCTTACGGCACTTCACAGAGTACAGGATTGACATCCATGCCTGCAACCACGCTG
CGCACACTGTGGGCTGCAGCGCCGCCACCTTCGTCTTTGCACGCACCATGCCACATAGAGAGGCCGATGG
CATCCCGGGGAAAGTGGCCTGGAAGGCAGCTGGCAAGAGCAGTGTCACCTTGCATTGGCTTGAACCACCT
GACCCCAATGGGCTCATTCTCAAGTATGAAATCAAGTACCGACGTCTGGGAGAGGAGGCCACAGTGCTTT
GTGTGTCCCGTCTTCGATATGCCAAAGTCGGTGGAGTCCACCTGGCTCTGCTGCCCCCTGGAAACTACTC
TGCTAAAGTTCGGGCCACCTCGTTGGCTGGCAATGGTTCCTGGACTGACGGTGTTACCTTCTACATCACC
GATCTAGAGGAAGAGGATACCGGGGGGATGCGCATCTTCCTCACTGTCACCCCTGTGGGGTTCATGCTGC
TCGTGACACTTGCTGCCCTCGGTTTCTTCTACAGCAGAAAGAGAAACAGCACGCTGTACACATCCGTGAA
CCCCGAGTATTTCAGTGCATCCCACATGTATGTCCCCGACGAGTGGGAGGTGCCTCGGGAGCAGATAGCC
ATCATCCGGGAGCTGGGCCAAGGCTCTTTTGGGATGGTCTATGAGGGACTGGCCCGAGGACTTGAGGCTG
GAGAGGAGTCCACGCCTGTAGCCCTGAAGACAGTTAATGAGCTGGCCAGCGCTCGGGAACGCGTTGAATT
CCTCAAGGAAGCATCTGTCATGAAGGCATTCAAGTGTCACCATGTGGTTCGTCTCCTGGGTGTGGTGTCT
CAGGGCCAGCCAACTCTGGTCATCATGGAGTTAATGACCCGTGGGGACCTCAAGAGCCATCTCCGATCTC
TGAGACCTGAGGCAGAGAACAACCCCGGCCTCCCGCAGCCTGCACTCAGTGACATGATTCAGATGGCAGG
GGAAATTGCAGATGGCATGGCCTACCTTGCTGCCAAGAAGTTTGTGCACCGGGACCTGGCGGCCCGCAAC
TGCATGGTGTCCCAGGATTTCACAGTCAAAATTGGTGACTTTGGAATGACTCGGGATGTGTATGAGACAG
ACTATTACCGCAAGGGTGGAAAAGGGTTACTGCCAGTGCGCTGGATGGCCCCCGAGTCCCTCAAAGATGG
AATCTTCACCACTCACTCAGATGTCTGGTCCTTCGGTGTGGTGCTCTGGGAGATTGTGACCCTGGCCGAA
CAACCATACCAGGGTCTATCAAATGAGCAGGTGCTGAAATTTGTCATGGATGGTGGAGTTCTAGAGGAGC
TGGAGAACTGTCCGATTCAGCTACAAGAGCTGATGAGACTCTGCTGGCAGCATAGTCCACGCCTGCGCCC
GACTTTCGTCCACATCCTGGATCGCATACAGGATGAGCTTCGGCCCTCTTTCCGGCTCTGCTCCTTCTAC
TACAGCCCAGAGTGCCAGCGGGGTCAGGCCTCCTTGCTGCCTACTGAGGCAGAACCTGATTCCCCACCAA
CCTTAAATGGAGCTTCAGACTATAGTGCCCCAAATGGGGGCCCAGGACACTGA

Translation (1300 aa):
MAVPALWPWGVHLLMSLLSLGSGLDTLEVCPSLDIRSEVTELRRLENCSVVEGHLQILLMFAATGEDFRG
LSFPRLTQVTDYLLLFRVYGLESLRDLFPNLTVIRGTRLFLGYALIIFEMPHLRDVGLPSLGAVLRGAVR
VEKNQELCHLSTIDWGLLQPAPGTNHIVGNKLGEECADVCPGVLGAAGEPCSRTTFSGRTDYRCWTSSHC
QKVCPCPRGMACTAGGDCCHSECLGGCSQPEDPRACVACRHLYFQGVCLRACPPGTYQYESWRCVTAELC
AHLREVPGLATTFGIYEGSCLAQCPPGFTRNGSSIFCHKCEGLCPKECKVGTKTIDSVQATQDLVGCTHV
EGNLILNLRQGYNLEPELQRNLGLVETITGFLKIKHSFALVTLGFFKNLKLIRGDSMVDGNYTLYVLDNQ
NLQQLGSWVTAGLTIPVGKIYFAFNPRLCLEHIYQLEEVTGTRGRQSKAEINPRTNGDRAACQTRTLRFV
FNLTEEDRILLRWERYEPLEARDLLSFIVYYKESPFQNATEHVGPDACGTQSWNLLDVELPLSRTQEPGV
TLAPLKPWTQYAVFVRAITLTTAEDSPHQGAQSPIVYLRTLPAAPTVPQDVISTSNSSSHLLVRWKPPVQ
RNGNITYYLVLWQRLAEDGDLYINDYCHRGLRLPTSSHDTRFDREDPALEAEPEQGCCPCQHSPPGQALP
ALEAQEVTFQKKFENFLHHAITIPKAPWKVTSINKNPQRDSERHRREAGLLRLGKNNSDFEIQEDKVPRE
RAILSGLRHFTEYRIDIHACNHAAHTVGCSAATFVFARTMPHREADGIPGKVAWKAAGKSSVTLHWLEPP
DPNGLILKYEIKYRRLGEEATVLCVSRLRYAKVGGVHLALLPPGNYSAKVRATSLAGNGSWTDGVTFYIT
DLEEEDTGGMRIFLTVTPVGFMLLVTLAALGFFYSRKRNSTLYTSVNPEYFSASHMYVPDEWEVPREQIA
IIRELGQGSFGMVYEGLARGLEAGEESTPVALKTVNELASARERVEFLKEASVMKAFKCHHVVRLLGVVS
QGQPTLVIMELMTRGDLKSHLRSLRPEAENNPGLPQPALSDMIQMAGEIADGMAYLAAKKFVHRDLAARN
CMVSQDFTVKIGDFGMTRDVYETDYYRKGGKGLLPVRWMAPESLKDGIFTTHSDVWSFGVVLWEIVTLAE
QPYQGLSNEQVLKFVMDGGVLEELENCPIQLQELMRLCWQHSPRLRPTFVHILDRIQDELRPSFRLCSFY
YSPECQRGQASLLPTEAEPDSPPTLNGASDYSAPNGGPGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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