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Report for CCDS24901.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24901.1 Public Mus musculus 11 Fxr2 23 108 98 CCDS HistoryNCBI Gene:23879Re-query CCDS DB by CCDS ID:24901.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24901.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018909.3 ENSMUSP00000018909.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018909.3Link to Ensembl Protein Viewer:ENSMUSP00000018909.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000018909Re-query CCDS DB by Protein ID:ENSMUSP00000018909
Original member Current member NCBI NM_011814.2 NP_035944.2 Accepted alive Link to Nucleotide Sequence:NM_011814.2Link to Protein Sequence:NP_035944.2Re-query CCDS DB by Nucleotide ID:NM_011814Re-query CCDS DB by Protein ID:NP_035944Link to BLAST:NP_035944.2

Chromosomal Locations for CCDS 24901.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 69633318 69633398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69639390 69639442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69640234 69640327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69641282 69641353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69641441 69641589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69642047 69642140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69643838 69643954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69648805 69648975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69649150 69649228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69649728 69649837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69650463 69650549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69650844 69651072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69651239 69651436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69651523 69651723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69651978 69652073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69652210 69652307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69652604 69652699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2025 nt):
ATGGGCGGCCTGGCCTCTGGGGGGGATGTGGAGCCGGGACTGCCCGTCGAGGTGCGGGGCTCCAACGGGG
CCTTCTACAAGGGCTTTGTAAAGGATGTCCATGAAGACTCTGTCACTATCTTCTTTGAGAACAACTGGCA
GAGTGAGAGACAGATTCCCTTTGGGGATGTCCGACTACCGCCTCCAGCTGACTACAATAAGGAAATCACA
GAAGGAGATGAAGTAGAGGTCTATTCGAGAGCCAATGAACAGGAACCTTGTGGCTGGTGGCTGGCCCGGG
TGCGGATGATGAAGGGAGATTTCTATGTCATTGAGTACGCTGCCTGTGATGCTACCTACAATGAGATTGT
CACTCTGGAACGACTTCGGCCAGTCAATCCCAGTCCCCTTGCAACCAAAGGCAGCTTCTTCAAGGTTACC
ATGGCTGTGCCTGAGGACCTCAGGGAGGCCTGCTCCAATGAAAATGTCCATAAGGAGTTCAAGAAAGCAC
TGGGAGCCAACTGCATCTTTCTCAACATCACAAACAGTGAGCTCTTTATTCTGTCAACCACAGAAGCCCC
TGTGAAGAGGGCATCTTTGTTGGGTGATATGCATTTCCGAAGCCTTCGCACCAAATTGCTGCTCATGTCC
CGCAATGAAGAAGCTACTAAGCACCTAGAGACAAGTAAGCAGCTGGCAGCAGCCTTCCAAGAGGAGTTCA
CAGTGCGAGAGGACCTGATGGGTCTGGCGATCGGAACGCACGGTGCCAACATCCAGCAGGCTCGGAAAGT
GCCCGGAGTGACTGCCATTGAGTTGGGTGAAGAGACCTGCACTTTCCGAATCTATGGGGAGACACCAGAG
GCATGCAGACAGGCTCGAAGCTACCTTGAATTTTCCGAGGACTCTGTACAAGTGCCCAGGAACCTGGTTG
GCAAAGTGATCGGAAAGAACGGGAAAGTGATTCAGGAGATTGTGGATAAGTCTGGTGTGGTGAGGGTTCG
TGTGGAAGGAGATAACGACAAGAAGAACCCCAGGGAGGAGGGAATGGTTCCCTTCATATTTGTTGGCACC
CGAGAGAACATCAGCAATGCCCAGGCACTGCTTGAGTATCACCTCTCCTACCTGCAGGAGGTTGAACAGC
TTCGCCTGGAGAGACTGCAGATTGACGAACAGCTTCGGCAGATTGGGCTGGGCTTTCGCCCTCCTGGGAG
TGGACGGGGTGGCAGTGGTGGTGGCAGTGACAAGGCGGGCTATACCACAGACGAAAGCTCCTCCTCTTCC
CTGCACACGACCAGAACCTATGGGGGCAGCTATGGGGGCCGGGGCCGGGGCCGGAGGACTGGTGGTCCTG
CCTATGGCCCCAGCTCAGACCCCTCCACAGCTTCAGAGACAGAGTCAGAAAAGAGAGAGGAGTCTAATCG
AGCAGGACCTGGTGACAGAGATCCCCCAAGCCGTGGAGAAGAAAGCAGGAGGCGGCCGATTGGGGGCCGG
GGAAGGGGACCCCCACCTGTTCCCCGGCCTACCTCAAGATATAACTCATCATCTATTAGCTCAGTGCTAA
AGGATCCAGACAGCAATCCTTACAGCCTCTTGGACACATCTGAACCAGAGCCTCCAGTTGATTCGGAGCC
TGGTGAACCTCCTCCAGCAAGTGCCCGTCGTCGCCGTTCCCGCCGCCGCCGTACTGATGAAGACAGGACT
GTCATGGACGGAGGCCTGGAGTCTGATGGTCCTAACATGACAGAGAATGGCCTGGAAGATGAATCAAGAC
CCCAGAGACGAAATCGCAGCCGCCGCCGCCGTAATCGTGGTAACCGGACTGATGGGTCCATCAGTGGAGA
CCGCCAACCAGTGACTGTGGCTGACTATATCTCACGGGCAGAGTCTCAGAGCCGCCAGCGGCCCCTGGAA
CGCACGAAACCCTCAGAGGATTCTCTTTCAGGACAGAAGGGTGACTCTGTCAGCAAGCTTCCCAAGGGCC
CCTCAGAGAATGGGGAGCTCTCTGCCCCCTTGGAGTTGGGTAGTTTGGTGAATGGAGTTTCATAA

Translation (674 aa):
MGGLASGGDVEPGLPVEVRGSNGAFYKGFVKDVHEDSVTIFFENNWQSERQIPFGDVRLPPPADYNKEIT
EGDEVEVYSRANEQEPCGWWLARVRMMKGDFYVIEYAACDATYNEIVTLERLRPVNPSPLATKGSFFKVT
MAVPEDLREACSNENVHKEFKKALGANCIFLNITNSELFILSTTEAPVKRASLLGDMHFRSLRTKLLLMS
RNEEATKHLETSKQLAAAFQEEFTVREDLMGLAIGTHGANIQQARKVPGVTAIELGEETCTFRIYGETPE
ACRQARSYLEFSEDSVQVPRNLVGKVIGKNGKVIQEIVDKSGVVRVRVEGDNDKKNPREEGMVPFIFVGT
RENISNAQALLEYHLSYLQEVEQLRLERLQIDEQLRQIGLGFRPPGSGRGGSGGGSDKAGYTTDESSSSS
LHTTRTYGGSYGGRGRGRRTGGPAYGPSSDPSTASETESEKREESNRAGPGDRDPPSRGEESRRRPIGGR
GRGPPPVPRPTSRYNSSSISSVLKDPDSNPYSLLDTSEPEPPVDSEPGEPPPASARRRRSRRRRTDEDRT
VMDGGLESDGPNMTENGLEDESRPQRRNRSRRRRNRGNRTDGSISGDRQPVTVADYISRAESQSRQRPLE
RTKPSEDSLSGQKGDSVSKLPKGPSENGELSAPLELGSLVNGVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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