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Report for CCDS24884.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24884.1 Public Mus musculus 11 Aloxe3 23 108 98 CCDS HistoryNCBI Gene:23801Re-query CCDS DB by CCDS ID:24884.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24884.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021268.8 ENSMUSP00000021268.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021268.8Link to Ensembl Protein Viewer:ENSMUSP00000021268.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000021268Re-query CCDS DB by Protein ID:ENSMUSP00000021268
Original member Current member NCBI NM_011786.2 NP_035916.2 Accepted alive Link to Nucleotide Sequence:NM_011786.2Link to Protein Sequence:NP_035916.2Re-query CCDS DB by Nucleotide ID:NM_011786Re-query CCDS DB by Protein ID:NP_035916Link to BLAST:NP_035916.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035916.2 711 Q9WV07 711 100% 0 0

Chromosomal Locations for CCDS 24884.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 69126403 69126549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69127326 69127530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69128615 69128696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69129566 69129685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69130005 69130130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69132733 69132836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69133029 69133201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69133938 69134081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69134164 69134367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69134457 69134543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69135006 69135175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69135872 69135993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69142186 69142286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69142847 69143017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69148560 69148739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2136 nt):
ATGGCAGTATATCGGCTGTGTGTGACCACTGGTTCCTACCTGAAGGCTGGCACATTGGATAACATCTATG
CTACATTGGTAGGCACCTGTGGTGAAAGCCCTAAGCAGAAGCTGGATCGCGTAGGCAGGGACTTCGCCTC
TGGATCGGTTCAGAAGTATAAGGTGCGCTGTGAAGCAGAGCTGGGTGAGATCTTGCTGTTGCGCTTACAC
AAGGAGCGCTTTGCTTTCTTCTGCAAGGACCCTTGGTACTGCAGTCGAATCTGTGTCACTGCCCCCGATG
GCTCTGCTGTCCACTTTCCCTGCTACCAGTGGATCGATGGCTACTGTACTGTGGAGCTGCGGCCAGGAAC
AGCAAGAACCATCTGTCAGGATTCTCTTCCCCTCCTTCTGGACCACAGGAAACGGGAACTCCAAGCCCGC
CAAGAATGTTATCGCTGGAAGATCTTCGCCCCTGGCTTCCCTCGGATGGTGGATGTCAGCAGCTTTCAGG
AGATGGAGTCAGATAAGAAATTTGCCTTGACCAAGACAGTACCTTGTGCAGAACAGGATGACAACTCTGG
GAACCGGTACCTGCCTGGCTTTCCTATGAAGATTGACATCCCATCTCTGCTGCACATGGAACCCAACATT
CGATACTCAGCCACCAAGACGGCCTCACTGATCTTCAACGCCCTTCCTGCATCCTTTGGCATGAAGATTC
GAGGTCTCCTGGACCGCAAGGGCTCCTGGAAGAGGCTGGACGACATCCGGAACATCTTCTGGTGCCATAA
GACCTTCACTTCAGAGTACGTCACCGAGCATTGGTGTGAGGACAGCTTCTTTGGGTACCAGTACCTGAAT
GGTGTCAACCCTGTCATGCTTCATTGCCTCTCCAGCTTGCCCAGCAAGCTGCCTGTCACCAATGACATGG
TGGCACCTTTGCTGGGACCAGGCACCTGCCTACAAACAGAGCTAGAGAGGGGGCACATCTTCCTGGCGGA
CTACTGGATCCTGGCGGAGGCCCCAGTCCATTGCATAAACGGTCTCCAACAGTACGTAACAGCGCCCCTC
TGCCTGTTGTGGCTCAACCCACAGGGGGTGCTGCTGCCATTGGCAATCCAGCTCAGCCAGACACCAGGGC
CAGAGAGCCCCATCTTTCTGCCCACTGATTGCGAGTTGGACTGGCTGCTGGCCAAGACGTGGGTGCGCAA
CTCTGAGTTTTTGGTGCACGAGAACAACACGCATTTTCTGTGCACGCATTTGCTATGCGAGGCCTTCTCC
ATGGCTACACTGCGTCAGCTGCCGCTCTGTCATCCAGTCTACAAGCTCCTGCTTCCTCATACTCGCTACA
CGCTGCAAGTGAACACCATCGCAAGAGCCACGCTGCTCAACCCAGACGGCCTCGTGGACAAGGTCACGTC
CATCGGTAGGCAGGGCCTCATCTACCTCATGAGCACCGGGCTGGCCCACTTCACCTACACGGATTTCTGC
CTACCGGATAGCATACGGGCTCGTGGCGTCCTGACCATTCCCAACTACCACTACCGAGACGACGGCCTGA
AGATCTGGGCGGCTATTGAGAGGTTTGTCTCAGAGATTGTGAGTTACTATTATCCCAGCGATGCGTCTGT
GCAGCAGGACTGTGAACTGCAGGCCTGGGTGGGTGAGATTTTTGCTCAGGCGTTCCTCGGACGGGAAAGT
TCAGGCTTCCCAAGCCGGCTGTGCACCCCAGGAGAGCTCGTGAAGTATCTCACCGCAATCATCTTTAATT
GCTCCGCCCAGCACGCTGCGGTCAATAGTGGGCAGCATGACTTTGGGGCCTGGATGCCCAACGCCCCATC
ATCCATGAGGCAGCCTCCGCCTCAGACCAAGGGCGACACGACAATGAAGAGTTACCTAGACACCCTCCCA
GAGGTGAACACCACCTGTAGAAACCTTCTCCTCTTCTGGCTGGTCAGCCAAGAGCCAAAGGACCAGAGAC
CTCTGGGCACCTACCCAGATGAACACTTCACAGAGGAGGCCCCACGGCAGAGCATCGCAGCCTTCCAGAA
CTGCCTGGCCCAGATCTCAAAGGACATCAGGGAGCGCAACCAGAGCCTGGCACTGCCCTATGCCTACTTG
GATCCTCCACTCATTGAGAACAGTGTTTCCATTTGA

Translation (711 aa):
MAVYRLCVTTGSYLKAGTLDNIYATLVGTCGESPKQKLDRVGRDFASGSVQKYKVRCEAELGEILLLRLH
KERFAFFCKDPWYCSRICVTAPDGSAVHFPCYQWIDGYCTVELRPGTARTICQDSLPLLLDHRKRELQAR
QECYRWKIFAPGFPRMVDVSSFQEMESDKKFALTKTVPCAEQDDNSGNRYLPGFPMKIDIPSLLHMEPNI
RYSATKTASLIFNALPASFGMKIRGLLDRKGSWKRLDDIRNIFWCHKTFTSEYVTEHWCEDSFFGYQYLN
GVNPVMLHCLSSLPSKLPVTNDMVAPLLGPGTCLQTELERGHIFLADYWILAEAPVHCINGLQQYVTAPL
CLLWLNPQGVLLPLAIQLSQTPGPESPIFLPTDCELDWLLAKTWVRNSEFLVHENNTHFLCTHLLCEAFS
MATLRQLPLCHPVYKLLLPHTRYTLQVNTIARATLLNPDGLVDKVTSIGRQGLIYLMSTGLAHFTYTDFC
LPDSIRARGVLTIPNYHYRDDGLKIWAAIERFVSEIVSYYYPSDASVQQDCELQAWVGEIFAQAFLGRES
SGFPSRLCTPGELVKYLTAIIFNCSAQHAAVNSGQHDFGAWMPNAPSSMRQPPPQTKGDTTMKSYLDTLP
EVNTTCRNLLLFWLVSQEPKDQRPLGTYPDEHFTEEAPRQSIAAFQNCLAQISKDIRERNQSLALPYAYL
DPPLIENSVSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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