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Report for CCDS24413.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24413.1 Public Mus musculus 11 Npc1l1 23 108 98 CCDS HistoryNCBI Gene:237636Re-query CCDS DB by CCDS ID:24413.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24413.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004505.2 ENSMUSP00000004505.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004505.2Link to Ensembl Protein Viewer:ENSMUSP00000004505.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000004505Re-query CCDS DB by Protein ID:ENSMUSP00000004505
Original member Current member NCBI NM_207242.2 NP_997125.2 Accepted alive Link to Nucleotide Sequence:NM_207242.2Link to Protein Sequence:NP_997125.2Re-query CCDS DB by Nucleotide ID:NM_207242Re-query CCDS DB by Protein ID:NP_997125Link to BLAST:NP_997125.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997125.2 1333 Q6T3U4 1333 99.925% 0 1

Chromosomal Locations for CCDS 24413.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 6211458 6211660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6214011 6214173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6214260 6214373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6214526 6214757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6215021 6215171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6217478 6217533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6217707 6217833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6218234 6218361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6218552 6218742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6221825 6221914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6222142 6222279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6223029 6223156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6223321 6223435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6224138 6224320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6224772 6224900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6225120 6225292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6225629 6225729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6227829 6229357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6230073 6230123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4002 nt):
ATGGCAGCTGCCTGGCAGGGATGGCTGCTCTGGGCCCTGCTCCTGAATTCGGCCCAGGGTGAGCTCTACA
CACCCACTCACAAAGCTGGCTTCTGCACCTTTTATGAAGAGTGTGGGAAGAACCCAGAGCTTTCTGGAGG
CCTCACATCACTATCCAATATCTCCTGCTTGTCTAATACCCCAGCCCGCCATGTCACAGGTGACCACCTG
GCTCTTCTCCAGCGCGTCTGTCCCCGCCTATACAATGGCCCCAATGACACCTATGCCTGTTGCTCTACCA
AGCAGCTGGTGTCATTAGACAGTAGCCTGTCTATCACCAAGGCCCTCCTTACACGCTGCCCGGCATGCTC
TGAAAATTTTGTGAGCATACACTGTCATAATACCTGCAGCCCTGACCAGAGCCTCTTCATCAATGTTACT
CGCGTGGTTCAGCGGGACCCTGGACAGCTTCCTGCTGTGGTGGCCTATGAGGCCTTTTATCAACGCAGTT
TTGCAGAGAAGGCCTATGAGTCCTGTAGCCGGGTGCGCATCCCTGCAGCTGCCTCGCTGGCTGTGGGCAG
CATGTGTGGAGTGTATGGCTCTGCCCTCTGCAATGCTCAGCGCTGGCTCAACTTCCAAGGAGACACAGGG
AATGGCCTGGCTCCGCTGGACATCACCTTCCACCTCTTGGAGCCTGGCCAGGCCCTGGCAGATGGGATGA
AGCCACTGGATGGGAAGATCACACCCTGCAATGAGTCCCAGGGTGAAGACTCGGCAGCCTGTTCCTGCCA
GGACTGTGCAGCATCCTGCCCTGTCATCCCTCCGCCCCCGGCCCTGCGCCCTTCTTTCTACATGGGTCGA
ATGCCAGGCTGGCTGGCTCTCATCATCATCTTCACTGCTGTCTTTGTATTGCTCTCTGTTGTCCTTGTGT
ATCTCCGAGTGGCTTCCAACAGGAACAAGAACAAGACAGCAGGCTCCCAGGAAGCCCCCAACCTCCCTCG
TAAGCGCAGATTCTCACCTCACACTGTCCTTGGCCGGTTCTTCGAGAGCTGGGGAACAAGGGTGGCCTCA
TGGCCACTCACTGTCTTGGCACTGTCCTTCATAGTTGTGATAGCCTTGTCAGTAGGCCTGACCTTTATAG
AACTCACCACAGACCCTGTGGAACTGTGGTCGGCCCCTAAAAGCCAAGCCCGGAAAGAAAAGGCTTTCCA
TGACGAGCATTTTGGCCCCTTCTTCCGAACCAACCAGATTTTTGTGACAGCTAAGAACAGGTCCAGCTAC
AAGTACGACTCCCTGCTGCTAGGGCCCAAGAACTTCAGTGGGATCCTATCCCTGGACTTGCTGCAGGAGC
TGTTGGAGCTACAGGAGAGACTTCGACACCTGCAAGTGTGGTCCCATGAGGCACAGCGCAACATCTCCCT
CCAGGACATCTGCTATGCTCCCCTCAAACCGCATAACACCAGCCTCACTGACTGCTGTGTCAACAGCCTC
CTTCAATACTTCCAGAACAACCACACACTCCTGCTGCTCACAGCCAACCAGACTCTGAATGGCCAGACCT
CCCTGGTGGACTGGAAGGACCATTTCCTCTACTGTGCCAATGCCCCTCTCACGTACAAAGATGGCACAGC
CCTGGCCCTGAGCTGCATAGCTGACTACGGGGCACCTGTCTTCCCCTTCCTTGCTGTTGGGGGCTACCAA
GGGACGGACTACTCGGAGGCAGAAGCCCTGATCATAACCTTCTCTATCAATAACTACCCCGCTGATGATC
CCCGCATGGCCCACGCCAAGCTCTGGGAGGAGGCTTTCTTGAAGGAAATGCAATCCTTCCAGAGAAGCAC
AGCTGACAAGTTCCAGATTGCGTTCTCAGCTGAGCGTTCTCTGGAGGACGAGATCAATCGCACTACCATC
CAGGACCTGCCTGTCTTTGCCATCAGCTACCTTATCGTCTTCCTGTACATCTCCCTGGCCCTGGGCAGCT
ACTCCAGATGGAGCCGAGTTGCGGTGGATTCCAAGGCTACTCTGGGCCTAGGTGGGGTGGCTGTTGTGCT
GGGAGCAGTCGTGGCTGCCATGGGCTTCTACTCCTACCTGGGTGTCCCCTCCTCTCTGGTCATCATTCAA
GTGGTACCTTTCCTGGTGCTGGCTGTGGGAGCTGACAACATCTTCATCTTTGTTCTTGAGTACCAGAGGC
TGCCTAGGATGCCCGGGGAGCAGCGAGAGGCTCACATTGGCCGCACCCTGGGTAGTGTGGCCCCCAGCAT
GCTGCTGTGCAGCCTCTCTGAGGCCATCTGCTTCTTTCTAGGGGCCCTGACCTCCATGCCAGCTGTGAGG
ACCTTTGCCTTGACCTCTGGCTTAGCAATCATCTTTGACTTCCTGCTCCAGATGACAGCCTTTGTGGCCC
TGCTCTCCCTGGATAGCAAGAGGCAGGAGGCCTCTCGCCCCGACGTCGTGTGCTGCTTTTCAAGCCGAAA
TCTGCCCCCACCGAAACAAAAAGAAGGCCTCTTACTTTGCTTCTTCCGCAAGATATACACTCCCTTCCTG
CTGCACAGATTCATCCGCCCTGTTGTGCTGCTGCTCTTTCTGGTCCTGTTTGGAGCAAACCTCTACTTAA
TGTGCAACATCAGCGTGGGGCTGGACCAGGATCTGGCTCTGCCCAAGGATTCCTACCTGATAGACTACTT
CCTCTTTCTGAACCGGTACTTGGAAGTGGGGCCTCCAGTGTACTTTGACACCACCTCAGGCTACAACTTT
TCCACCGAGGCAGGCATGAACGCCATTTGCTCTAGTGCAGGCTGTGAGAGCTTCTCCCTAACCCAGAAAA
TCCAGTATGCCAGTGAATTCCCTAATCAGTCTTATGTGGCTATTGCTGCATCCTCCTGGGTAGATGACTT
CATCGACTGGCTGACCCCATCCTCCTCCTGCTGCCGCATTTATACCCGTGGCCCCCATAAAGATGAGTTC
TGTCCCTCAACGGATACTTCCTTCAACTGTCTCAAAAACTGCATGAACCGCACTCTGGGTCCCGTGAGAC
CCACAACAGAACAGTTTCATAAGTACCTGCCCTGGTTCCTGAATGATACGCCCAACATCAGATGTCCTAA
AGGGGGCCTAGCAGCGTATAGAACCTCTGTGAATTTGAGCTCAGATGGCCAGATTATAGCCTCCCAGTTC
ATGGCCTACCACAAGCCCTTACGGAACTCACAGGACTTTACAGAAGCTCTCCGGGCATCCCGGTTGCTAG
CAGCCAACATCACAGCTGAACTACGGAAGGTGCCTGGGACAGATCCCAACTTTGAGGTCTTCCCTTACAC
GATCTCCAATGTGTTCTACCAGCAATACCTGACGGTTCTCCCTGAGGGAATCTTCACTCTTGCTCTCTGC
TTCGTGCCCACCTTTGTGGTCTGCTACCTCCTACTGGGCCTGGACATACGCTCAGGCATCCTCAACCTGC
TCTCCATCATTATGATCCTCGTGGACACCATCGGCCTCATGGCTGTGTGGGGTATCAGCTACAATGCTGT
GTCCCTCATCAACCTTGTCACGGCAGTGGGCATGTCTGTGGAGTTCGTGTCCCACATTACCCGGTCCTTT
GCTGTAAGCACCAAGCCTACCCGGCTGGAGAGAGCCAAAGATGCTACTATCTTCATGGGCAGTGCGGTGT
TTGCTGGAGTGGCCATGACCAACTTCCCGGGCATCCTCATCCTGGGCTTTGCTCAGGCCCAGCTTATCCA
GATTTTCTTCTTCCGCCTCAACCTCCTGATCACCTTGCTGGGTCTGCTACACGGCCTGGTCTTCCTGCCC
GTTGTCCTCAGCTATCTGGGGCCAGATGTTAACCAAGCTCTGGTACTGGAGGAGAAACTAGCCACTGAGG
CAGCCATGGTCTCAGAGCCTTCTTGCCCACAGTACCCCTTCCCGGCTGATGCAAACACCAGTGACTATGT
TAACTACGGCTTTAATCCAGAATTTATCCCTGAAATTAATGCTGCTAGCAGCTCTCTGCCCAAAAGTGAC
CAAAAGTTCTAA

Translation (1333 aa):
MAAAWQGWLLWALLLNSAQGELYTPTHKAGFCTFYEECGKNPELSGGLTSLSNISCLSNTPARHVTGDHL
ALLQRVCPRLYNGPNDTYACCSTKQLVSLDSSLSITKALLTRCPACSENFVSIHCHNTCSPDQSLFINVT
RVVQRDPGQLPAVVAYEAFYQRSFAEKAYESCSRVRIPAAASLAVGSMCGVYGSALCNAQRWLNFQGDTG
NGLAPLDITFHLLEPGQALADGMKPLDGKITPCNESQGEDSAACSCQDCAASCPVIPPPPALRPSFYMGR
MPGWLALIIIFTAVFVLLSVVLVYLRVASNRNKNKTAGSQEAPNLPRKRRFSPHTVLGRFFESWGTRVAS
WPLTVLALSFIVVIALSVGLTFIELTTDPVELWSAPKSQARKEKAFHDEHFGPFFRTNQIFVTAKNRSSY
KYDSLLLGPKNFSGILSLDLLQELLELQERLRHLQVWSHEAQRNISLQDICYAPLKPHNTSLTDCCVNSL
LQYFQNNHTLLLLTANQTLNGQTSLVDWKDHFLYCANAPLTYKDGTALALSCIADYGAPVFPFLAVGGYQ
GTDYSEAEALIITFSINNYPADDPRMAHAKLWEEAFLKEMQSFQRSTADKFQIAFSAERSLEDEINRTTI
QDLPVFAISYLIVFLYISLALGSYSRWSRVAVDSKATLGLGGVAVVLGAVVAAMGFYSYLGVPSSLVIIQ
VVPFLVLAVGADNIFIFVLEYQRLPRMPGEQREAHIGRTLGSVAPSMLLCSLSEAICFFLGALTSMPAVR
TFALTSGLAIIFDFLLQMTAFVALLSLDSKRQEASRPDVVCCFSSRNLPPPKQKEGLLLCFFRKIYTPFL
LHRFIRPVVLLLFLVLFGANLYLMCNISVGLDQDLALPKDSYLIDYFLFLNRYLEVGPPVYFDTTSGYNF
STEAGMNAICSSAGCESFSLTQKIQYASEFPNQSYVAIAASSWVDDFIDWLTPSSSCCRIYTRGPHKDEF
CPSTDTSFNCLKNCMNRTLGPVRPTTEQFHKYLPWFLNDTPNIRCPKGGLAAYRTSVNLSSDGQIIASQF
MAYHKPLRNSQDFTEALRASRLLAANITAELRKVPGTDPNFEVFPYTISNVFYQQYLTVLPEGIFTLALC
FVPTFVVCYLLLGLDIRSGILNLLSIIMILVDTIGLMAVWGISYNAVSLINLVTAVGMSVEFVSHITRSF
AVSTKPTRLERAKDATIFMGSAVFAGVAMTNFPGILILGFAQAQLIQIFFFRLNLLITLLGLLHGLVFLP
VVLSYLGPDVNQALVLEEKLATEAAMVSEPSCPQYPFPADANTSDYVNYGFNPEFIPEINAASSSLPKSD
QKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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