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Report for CCDS29533.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29533.1 Public Mus musculus 19 Slc22a26 23 108 98 CCDS HistoryNCBI Gene:236149Re-query CCDS DB by CCDS ID:29533.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29533.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065634.7 ENSMUSP00000064809.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065634.7Link to Ensembl Protein Viewer:ENSMUSP00000064809.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000065634Re-query CCDS DB by Protein ID:ENSMUSP00000064809
Original member Current member NCBI NM_146232.1 NP_666344.1 Accepted alive Link to Nucleotide Sequence:NM_146232.1Link to Protein Sequence:NP_666344.1Re-query CCDS DB by Nucleotide ID:NM_146232Re-query CCDS DB by Protein ID:NP_666344Link to BLAST:NP_666344.1

Chromosomal Locations for CCDS 29533.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 7782110 7782170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7782782 7782985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7785180 7785288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7786382 7786596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7788212 7788327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7790086 7790209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7790762 7790930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7791030 7791184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7796152 7796255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7802048 7802449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1659 nt):
ATGGCCTTTCAGGATCTTCTGAATCTAGTTGGAAGCCATGGGAGATTCCAGATCCTTCAGATGGCTTTCC
TTCTTATCTGCAATGTCATCACGATGCCTCATGTAATATTGGAAAACTTCACTGCAGCTAACCTTGGTCA
TCGCTGCTGGGTTCACATTATTGACAATGACACCAACTCTAATAATAACAGTGGGATCCTGAGCCAAGAT
GACCTCCTGAGGATCTCCATCCCACTGGATTCCAACCTGAGGCCAGAGAAGTGTCGTCGTTTTGTTCAAC
CACAGTGGCATCTTCTACAATTTAATGGATCCTTTTCCAATATGACAGAACCAGATACAGAGCCCTGTAT
GGATGGCTGGGTGTATGACCAGAGGACTTTTCTCTCCACCACTGTTACTGAGTGGAACCTGGTGTGTGGA
TCTCAGGAGCTGAATTCAGTGGCTAAATTTATATTCTTAATTGGCGTGTTGGCAGGACATTTTGTAGGTG
GACATTTATCAGACAAGTTTGGGAGGAAGTTACTTTTCAGATGTGCTTTGTTGCAAATGGCCATCACTGG
GACCTGTACAGCCTTGGCTCCCACCTTCTTCATCTACTGCTTACTTCGCTTCCTGACAGGGCTTTGTATC
ATACCCATAAACACAAATAGTGTTTTGCTCATGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGA
CCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAA
CTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAGGTGGCTGACA
GAATCAGCTCGGTGGCTGATTGTAACCAACAAACCCCAGAAGGCCTTACAGGAACTTAGAAAAGTTGCAA
GCAAGAATGGAATAAAGAATTCTGAAGATGTCCTAACCATGGAGGTTGTAAGAACCATCATGAAGGATGA
GATTGCAATACCACGAACAAAACCTTCTCTACGTGACTTGTTCCACATGCCCAACTTGCGAAAGCGCCTT
TGTCTCCTGTGCCTTTTGAGATTTCTACAAATATCACCTACTGTAGGGATCAACATGAACCTCCAACACT
TGAAAGGCAATGTCTTCCTAACCCAAAGTCTTACTTCTGCATTCTCAATCCCAGCCACTGCTCTTGGAGG
GTTTTTACTGAATTACATTGGCCGTAGAATAAGTCAACTCTTGCCCTGTTTGCTGTTTGGAATCTTCCTT
CTGAGCATAGTGTCTGTGCCTCAAGAAATGCAGACTCTGCTTGTGGTTTTGATAACACTGGCAGGAGGAA
GTTCTGCTATGATTTATAACAGTAATGTTCTATATTCAAGTGAGCTGATGCCCACGGTGATCAGGGCAAC
AGCATTAGGAGTCATTGGAATTTGTGGTGGTGTGGGGGCAGCCCTGTCTCCCCTTATTATGATCCTCACG
CTGTACTCTGCCTCCTTGCCCTGGATCATCTATGGAGTCCTCTCCATCCTTGGTGGCCTTCTTCCCTTGA
TCCTTCCTGAAACCAAGAATCAGCCTCTGCCTGACTCCATCCAAGATGTAGAATGTGGGTGGGAAAGTTC
AAAACAAAAAAAGGAGGAAGATGTCATCATTAAAGTGACTCAGTTTTAA

Translation (552 aa):
MAFQDLLNLVGSHGRFQILQMAFLLICNVITMPHVILENFTAANLGHRCWVHIIDNDTNSNNNSGILSQD
DLLRISIPLDSNLRPEKCRRFVQPQWHLLQFNGSFSNMTEPDTEPCMDGWVYDQRTFLSTTVTEWNLVCG
SQELNSVAKFIFLIGVLAGHFVGGHLSDKFGRKLLFRCALLQMAITGTCTALAPTFFIYCLLRFLTGLCI
IPINTNSVLLMLEWTSPKTQALVTTLSMSSHHFGGLILAGLAFAFQNWHHLQLAISVPIFVLLIPTRWLT
ESARWLIVTNKPQKALQELRKVASKNGIKNSEDVLTMEVVRTIMKDEIAIPRTKPSLRDLFHMPNLRKRL
CLLCLLRFLQISPTVGINMNLQHLKGNVFLTQSLTSAFSIPATALGGFLLNYIGRRISQLLPCLLFGIFL
LSIVSVPQEMQTLLVVLITLAGGSSAMIYNSNVLYSSELMPTVIRATALGVIGICGGVGAALSPLIMILT
LYSASLPWIIYGVLSILGGLLPLILPETKNQPLPDSIQDVECGWESSKQKKEEDVIIKVTQF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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