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Report for CCDS22543.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22543.1 Public Mus musculus 8 Cpne2 23 108 98 CCDS HistoryNCBI Gene:234577Re-query CCDS DB by CCDS ID:22543.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22543.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048653.9 ENSMUSP00000045755.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048653.9Link to Ensembl Protein Viewer:ENSMUSP00000045755.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000048653Re-query CCDS DB by Protein ID:ENSMUSP00000045755
Original member Current member NCBI NM_153507.2 NP_705727.1 Accepted alive Link to Nucleotide Sequence:NM_153507.2Link to Protein Sequence:NP_705727.1Re-query CCDS DB by Nucleotide ID:NM_153507Re-query CCDS DB by Protein ID:NP_705727Link to BLAST:NP_705727.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_705727.1 548 P59108 548 100% 0 0

Chromosomal Locations for CCDS 22543.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 94548366 94548545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94551170 94551349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94551740 94551814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94553390 94553461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94554675 94554758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94554930 94555019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94555509 94555607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94555972 94556058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94557420 94557479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94558125 94558258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94560109 94560163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94562738 94562789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94563957 94564090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94568591 94568827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94569971 94570078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1647 nt):
ATGGCCTACATTCCGGATGGGGGTGCTCCTACCGCTGGGGCCATCCCCTTGGGTTCTCAGTGCTGTGTGT
GCAAAGTGGAGCTGTCAGTGAGTGGCCAGAACCTGCTGGACCGGGATGTCACCTCCAAGTCTGACCCTTT
CTGTGTCCTCTTTATAGAAGACAATGGCAGGTGGATGGAGTTCGACAGAACAGAAACAGCCGTCAACAAC
CTCAACCCAGCCTTCTCCAAGAAGTTCGTGCTGGACTACCACTTCGAGGAGGTGCAGAAGCTCAAGTTCG
CCCTGTTTGACCAGGACAAGTCCAGTGCCCAGTTGGATGAGCATGATTTCCTGGGCCAGTTCTCCTGCAG
CCTGGGCACGATTGTCTCCAGCAAGAAGATCACTAGGCCTCTGCTGCTGATGAATGACAAGCCAGCGGGG
AAGGGCGTAATCACGATTGCAGCCCAAGAGCTGTCAGACAACCGAGTCATCACACTGAGCCTGGCTGGCA
GGAAACTGGATAAGAAGGACCTCTTTGGGAAGTCAGACCCTTTTCTTGAGTTTTACAAGCCAGGAGATGA
TGGCAAATGGATGCTGGTCCATAGGACCGAGGTGATTAAGTACACCCTGGACCCGGTGTGGAAACCATTC
ACTGTCCCGTTGGTGTCCTTGTGTGATGGCGACCTGGAGAAGCCCATCCAGGTTATGTGCTACGACTATG
ACAGTAATGGAGGCCATGACTTCATCGGCGAGTTCCAGACCTCTGTGCTGCAGATGAGCGAGGCTCGGGA
TGGTGTCCCGCTGGAGATAGAGTGCATCAACCCCAAGAAGCAGAGGAAGAAGAAAAGCTACAAGAACTCG
GGCATCATTATTCTGAGATCATGCAAGATACACCGAAACTACTCATTCCTGGACTACATTCTGGGAGGCT
GCCAGCTCATGTTCACCGTTGGAATAGACTTCACAGCCTCCAATGGGAATCCCCTCGACCCTTCTTCTCT
CCATTATATCAACCCCATGGGCACCAATGAATACTTGTCAGCCATCTGGGCAGTGGGACAGATCATTCAG
GACTACGACAGTGATAAGATGTTCCCTGCTCTGGGATTTGGGGCCCAGTTACCACCAGACTGGAAGGTGT
CCCATGAGTTCGCTATCAACTTCAACCCCACTAACCCTTTCTGCTCAGGCGTGGATGGCATCGCCCAGGC
GTACTCAGCCTGTCTGCCCCACATTCGCTTCTATGGCCCCACAAACTTCTCCCCGATCGTCAACCATGTG
GCCCGGTTTGCAGCCCAGGCCACCCAGCAGCAGACAGCAACGCAGTACTTCATCCTCCTCATCATCACCG
ACGGGGTCATCAGTGACATGGAGGAGACTCGGCACGCCGTGGTGCAGGCCTCCAAGCTGCCCATGTCCAT
CATCATCGTGGGTGTGGGCAATGCTGACTTTGCAGCCATGGAGTTTCTAGACGGGGACAACCGTCGACTG
CGCTCACACACAGGCGAGGAGGCGGCCCGAGATATCGTGCAGTTCGTGCCCTTCCGAGAGTTCCGCAACG
CAGCAAAAGAAACGCTGGCTAAAGCGGTGTTGGCGGAGCTGCCTCAGCAAGTAGTGCAGTATTTCAAGCA
TAAAAACCTGCCCCCCACCAACTCAGAGCCTGCCTGA

Translation (548 aa):
MAYIPDGGAPTAGAIPLGSQCCVCKVELSVSGQNLLDRDVTSKSDPFCVLFIEDNGRWMEFDRTETAVNN
LNPAFSKKFVLDYHFEEVQKLKFALFDQDKSSAQLDEHDFLGQFSCSLGTIVSSKKITRPLLLMNDKPAG
KGVITIAAQELSDNRVITLSLAGRKLDKKDLFGKSDPFLEFYKPGDDGKWMLVHRTEVIKYTLDPVWKPF
TVPLVSLCDGDLEKPIQVMCYDYDSNGGHDFIGEFQTSVLQMSEARDGVPLEIECINPKKQRKKKSYKNS
GIIILRSCKIHRNYSFLDYILGGCQLMFTVGIDFTASNGNPLDPSSLHYINPMGTNEYLSAIWAVGQIIQ
DYDSDKMFPALGFGAQLPPDWKVSHEFAINFNPTNPFCSGVDGIAQAYSACLPHIRFYGPTNFSPIVNHV
ARFAAQATQQQTATQYFILLIITDGVISDMEETRHAVVQASKLPMSIIIVGVGNADFAAMEFLDGDNRRL
RSHTGEEAARDIVQFVPFREFRNAAKETLAKAVLAELPQQVVQYFKHKNLPPTNSEPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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