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Report for CCDS22401.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22401.1 Public Mus musculus 8 Colgalt1 23 108 98 CCDS HistoryNCBI Gene:234407Re-query CCDS DB by CCDS ID:22401.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22401.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047903.9 ENSMUSP00000047923.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047903.9Link to Ensembl Protein Viewer:ENSMUSP00000047923.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000047903Re-query CCDS DB by Protein ID:ENSMUSP00000047923
Original member Current member NCBI NM_146211.3 NP_666323.2 Accepted alive Link to Nucleotide Sequence:NM_146211.3Link to Protein Sequence:NP_666323.2Re-query CCDS DB by Nucleotide ID:NM_146211Re-query CCDS DB by Protein ID:NP_666323Link to BLAST:NP_666323.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666323.2 617 Q8K297 617 100% 0 0

Chromosomal Locations for CCDS 22401.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 71611200 71611444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71612084 71612194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71612910 71613027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71617550 71617684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71618075 71618279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71619652 71619771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71620601 71620677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71620748 71620854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71621764 71621896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71622703 71622830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71623090 71623296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71623493 71623760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1854 nt):
ATGGCGGCGTTGCCACGCGGGTCACGCGGGCTGCCGCTGCTGCCACTGCTCCTACTGCTGCCGCCGCTGG
GCGGCCCGCGCGGCGCGGACGGCTACTTTCCAGAGGAGCGCTGGAGCCCCGAGTCCCCGCTACAGGCGCC
GCGCGTGCTCATCGCGCTGCTGGCGCGGAACGCGGCACCCGCGCTGCCCGCCACGCTGGGCGCCCTGGAG
CAGCTGCGCCACCCACGGGAGCGCACGGCGCTGTGGGTGGCCACAGATCACAACACTGACAACACTTCAG
CCATACTTCGAGAGTGGCTGGTGGCAGTGAAGGGTTTATACCACTCTGTGGAGTGGCGACCGGCAGAGGA
ACCCAGCTCTTACCCAGACGAAGAAGGCCCCAAACACTGGTCCGATTCCCGCTACGAGCATGTCATGAAA
CTGCGCCAAGCAGCCTTGAAGTCAGCTAGGGACATGTGGGCTGACTACATTCTGTTCATGGACATCGACA
ACTTGATCACCAACCCCGACACTCTGAGCCTGCTCATCGCTGAGAACAAGACAGTGGTGGCCCCCATGCT
GGACTCCCGAGCGGCATACTCCAACTTCTGGTGTGGGATGACTTCGCAGGGCTACTACAAGCGCACCCCT
GCCTATATCCCCATCCGAAAACGAGACCGCAGGGGCTGCTTTGCAGTTCCCATGGTGCACTCTACCTTCC
TCATTGACCTGCGTAAGGCTGCATCCAGGAACCTGGCCTTTTACCCAACACACCCAGACTACACCTGGTC
TTTTGATGACATCATCGTCTTTGCCTTCTCCTGTAAACAGGCAGAGGTGCAAATGTACGTGTGCAATAAG
GAGGTGTACGGCTTCCTGCCCGTGCCACTGCGTGCGCACAGCAGCCTGCAGGACGAAGCAGAGAGCTTCA
TGCACGTGCAGCTGGAGGTCATGGTGAAACATCCACCAGTGCAGCTCTCCCGATTCATCTCAGCACCCAG
GAAGACTTCTGACAAGATGGGCTTCGATGAGGTCTTCATGATCAACCTGAAGCGGAGGCGGGACCGGCGA
GAACGCATGCTGCGGGCACTACATGAGCAGGAGATTGACTGCCAGCTGGTGGAGGCTGTAGATGGCAAAG
CCATGAACACCAGCCAGGTGGAAGCCATGGGCATCCAGATGCTGCCTGGCTACCGGGACCCCTACCATGG
GCGGCCACTCACCAAGGGAGAGCTGGGCTGCTTTCTCAGCCACTACAACATCTGGAAGGAGGTGGTTGAC
CGGGGACTACAGAAATCACTAGTGTTTGAGGATGATCTGCGTTTTGAGATCTTCTTCAAGAGACGTCTGA
TGAACCTCATGCGGGATGTGGAGCGTGAGGGGCTGGACTGGGACCTCATCTACGTGGGCCGGAAGCGCAT
GCAGGTGGAGCACCCTGAAAAGGCTGTGCCCCATGTAAGGAACCTGGTAGAGGCTGATTACTCCTACTGG
ACGCTAGCCTATGTAATCTCCCTGCAAGGTGCTCAGAAGTTGCTTGCTGCCAAGCCACTGGCCAAAATGC
TACCTGTTGATGAGTTTCTGCCTGTCATGTTTGACAAGCACCCAATGTCAGAATACAAGAGTCACTTCTC
TCCCCGCAACCTGCGTGCCTTCTCTGTGGAGCCCCTCCTTATCTACCCTACACACTACACAGGGGATGAT
GGCTATGTGAGTGACACAGAGACCTCAGTTGTGTGGAATAATGAGCAGGTTAAGACTGACTGGGACCGAG
CCAAGTCCCAGAAGATGCGGGAACAGCAAGCACTGAGCCGTGAGGCCAAGAACTCAGATGTGCTCCAGTC
TCCACTGGACAGCACTGCCCGTGATGAGCTTTGA

Translation (617 aa):
MAALPRGSRGLPLLPLLLLLPPLGGPRGADGYFPEERWSPESPLQAPRVLIALLARNAAPALPATLGALE
QLRHPRERTALWVATDHNTDNTSAILREWLVAVKGLYHSVEWRPAEEPSSYPDEEGPKHWSDSRYEHVMK
LRQAALKSARDMWADYILFMDIDNLITNPDTLSLLIAENKTVVAPMLDSRAAYSNFWCGMTSQGYYKRTP
AYIPIRKRDRRGCFAVPMVHSTFLIDLRKAASRNLAFYPTHPDYTWSFDDIIVFAFSCKQAEVQMYVCNK
EVYGFLPVPLRAHSSLQDEAESFMHVQLEVMVKHPPVQLSRFISAPRKTSDKMGFDEVFMINLKRRRDRR
ERMLRALHEQEIDCQLVEAVDGKAMNTSQVEAMGIQMLPGYRDPYHGRPLTKGELGCFLSHYNIWKEVVD
RGLQKSLVFEDDLRFEIFFKRRLMNLMRDVEREGLDWDLIYVGRKRMQVEHPEKAVPHVRNLVEADYSYW
TLAYVISLQGAQKLLAAKPLAKMLPVDEFLPVMFDKHPMSEYKSHFSPRNLRAFSVEPLLIYPTHYTGDD
GYVSDTETSVVWNNEQVKTDWDRAKSQKMREQQALSREAKNSDVLQSPLDSTARDEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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