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Report for CCDS52484.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52484.1 Public Mus musculus 8 Pcid2 23 108 98 CCDS HistoryNCBI Gene:234069Re-query CCDS DB by CCDS ID:52484.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52484.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164416.7 ENSMUSP00000133204.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164416.7Link to Ensembl Protein Viewer:ENSMUSP00000133204.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164416Re-query CCDS DB by Protein ID:ENSMUSP00000133204
Original member Current member NCBI NM_178708.3 NP_848823.2 Accepted alive Link to Nucleotide Sequence:NM_178708.3Link to Protein Sequence:NP_848823.2Re-query CCDS DB by Nucleotide ID:NM_178708Re-query CCDS DB by Protein ID:NP_848823Link to BLAST:NP_848823.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848823.2 399 Q8BFV2 399 100% 0 0

Chromosomal Locations for CCDS 52484.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 13078200 13078289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13078548 13078671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13079638 13079763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13079895 13079968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13081264 13081364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13085323 13085464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13086251 13086326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13090657 13090760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13094143 13094197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13095831 13095872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13097603 13097668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13098563 13098636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13100325 13100414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13104775 13104810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1200 nt):
ATGGCGCACATCACCATTAACCAGTACCTACAGCAGGTATATGAAGCCATCGACACCAGAGATGGAGCAT
CCTGTGCAGAGCTGGTATCCTTTAAGCACCCTCATGTTGCGAACCCACGGCTCCAGATGGCCTCTCCAGA
AGAGAAATGCCAGCAAGTTCTGGAGCCCCCATATGATGAAATGTTTGCAGCTCATTTAAGGTGTACCTAT
GCTGTGGGGAATCACGACTTCATAGAAGCGTACAAGTGCCAGACGGTGATAGTCCAATCATTCCTCCGGG
CATTCCAGGCTCACAAAGAGGAAAACTGGGCTCTGCCTGTCATGTATGCAGTAGCACTTGACCTTCGGAT
ATTTGCCAATAATGCAGACCAGCAGTTGGTAAAGAAAGGGAAGAGCAAAGTTGGAGACATGCTGGAAAAA
GCTGCCGAGCTGCTGATGAGCTGCTTCCGAGTCTGTGCCAGTGACACCCGTGCCGGCATAGAAGACTCTA
AGAAGTGGGGGATGCTGTTCCTGGTGAACCAGCTATTTAAAATCTACTTTAAGATCAACAAACTCCATTT
GTGTAAACCTCTTATCAGAGCCATCGACAGCTCGAATCTGAAAGATGACTATAGCACAGCGCAGAGGATC
ACGTACAAGTACTACGTGGGGCGCAAGGCCATGTTTGACAGTGACTTCAAGCAAGCGGAGGAGTACCTGT
CGTTTGCCTTTGAACACTGCCATCGCTCCAGCCAGAAGAACAAGAGGATGATTCTGATCTACCTGCTGCC
AGTGAAGATGCTGCTGGGTCACATGCCGACCATCGAGCTCCTGAGGAAATACCACCTGATGCAGTTTTCA
GAAGTGACCAAAGCCGTCAGTGAGGGCAACCTGCTGCTGCTCAATGAGGCGCTGGCAAAGCACGAGACGT
TCTTCATCCGCTGTGGCATCTTCCTCATCCTGGAGAAGCTGAAGATCATCACGTACAGGAACCTCTTCAA
GAAAGTGTATTTGTTACTCAAGACACATCAGCTGTCCCTAGACGCCTTTCTGGTCGCTTTGAAGTTCATG
CACGTGGAAGACGTGGACATTGACGAGGTCCAGTGCATTCTGGCCAACTTGATATACATGGGTCACATTA
AAGGCTACATCTCCCATCAGCATCAGAAACTGGTCGTCAGCAAGCAGAACCCTTTCCCTCCGCTGTCCAC
AGTGTGCTGA

Translation (399 aa):
MAHITINQYLQQVYEAIDTRDGASCAELVSFKHPHVANPRLQMASPEEKCQQVLEPPYDEMFAAHLRCTY
AVGNHDFIEAYKCQTVIVQSFLRAFQAHKEENWALPVMYAVALDLRIFANNADQQLVKKGKSKVGDMLEK
AAELLMSCFRVCASDTRAGIEDSKKWGMLFLVNQLFKIYFKINKLHLCKPLIRAIDSSNLKDDYSTAQRI
TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPTIELLRKYHLMQFS
EVTKAVSEGNLLLLNEALAKHETFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFM
HVEDVDIDEVQCILANLIYMGHIKGYISHQHQKLVVSKQNPFPPLSTVC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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