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Report for CCDS39792.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39792.1 Public Mus musculus 7 Mypop 23 108 98 CCDS HistoryNCBI Gene:232934Re-query CCDS DB by CCDS ID:39792.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39792.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059331.8 ENSMUSP00000058718.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059331.8Link to Ensembl Protein Viewer:ENSMUSP00000058718.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000059331Re-query CCDS DB by Protein ID:ENSMUSP00000058718
Original member Current member EBI ENSMUST00000131087.1 ENSMUSP00000117357.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000131087.1Link to Ensembl Protein Viewer:ENSMUSP00000117357.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000131087Re-query CCDS DB by Protein ID:ENSMUSP00000117357
Original member NCBI NM_145579.3 NP_663554.1 Updated not alive Link to Nucleotide Sequence:NM_145579.3Link to Protein Sequence:NP_663554.1Re-query CCDS DB by Nucleotide ID:NM_145579Re-query CCDS DB by Protein ID:NP_663554
Current member NCBI NM_145579.4 NP_663554.1 Accepted alive Link to Nucleotide Sequence:NM_145579.4Link to Protein Sequence:NP_663554.1Re-query CCDS DB by Nucleotide ID:NM_145579Re-query CCDS DB by Protein ID:NP_663554Link to BLAST:NP_663554.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663554.1 393 Q8R4U1-1 393 100% 0 0

Chromosomal Locations for CCDS 39792.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 18992110 18992620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19000491 19001161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1182 nt):
ATGGCCTCGGCGACCGCGGCGGCGGCGCCGGGCGAAGCGGAGGAGACCACCCGACTCCGCAAGCCGCGCT
TCTCCTTCGAGGAGAACCAGATCCTGATCCGAGAGGTGCGCGCCCACTACCCTCAGCTCTACGGCGCGCA
GAGCCGTCGGGTGAGCGTGGCCGAGCGGCGGCGAGTGTGGGACAGCATCGCCACCAAAATCAACGGCATC
ACCAGCTGGAAACGCACGGGCCAGGAGGTTCAGAAGCGTTGGAACGACTTCAAGCGCCGCACCAAGGAGA
AGCTGGCCCGCGTGCCGCATTCCACGCAGGGCGCGGGGCCCGCCGCTGAGGACGCCTTCTCTGCGGAGGA
GGAGACTATTTTCGCCATCCTGGGACCGGGTGTGGCGGGGCCGGGGGCTGGCTCTGGGGCTGAGGAGTCC
CGGGCAGCCGCCTCTTCACAGCCGCAGGCTTCGACCGCTAGTACACAACGGTATGTGTTGTCAGAGGACC
GCAGGCAGGATCGACGGGCAGATACACCAGCCCAGAGCAAGGGAGGCTCCAGCAGCCCAGAGTCCTGGGC
CCGGCCCTCTTGCAATCCCCAAGAAGCCAAGGAGCGTGAGTCCACGTCCCCTGCAGCCATGCAGCCTGTC
CAGCTGCCCCGCCTGGCCTTGTCTCCACCGCTCCCTGCCCCTCCACCACCACCCACGGCGCTGGCCCAAG
TGGCACCCTCATCTCCTAGCCCAACTCCTCCTCGGCCCACCTCAGCCCCAGAACAGTCCCTGGACTTCCT
GCGGGCTCAGCAGGAGACTGCCAATGCTATCAGGGAGCTGGCTGGCACCCTTCGGCAGGGACTGGCCAAA
CTGAGCGAGGCCCTCAGTGCCCTGTTACCCCTTTTGCCGGGAACCCCAGCTGACCCGCTGCCCCCGCCCC
CACCGCCACCTCCGCCCCCACCTCCCAAACCAGTCCTGCCACCCTCTGCCCCCAAGGTGGAGCTCGCCCC
AGAGCCTGTGTCTGTGGTAGCTGCTGTTGTGGATGGGGCTGTAGTGGCAGCGAGGGGAGTGATCATCTCC
CCCAGGAGCGAGGAAGGGGTGCCCAAACCACTACCCCCAGCCCCACCACTTCCCCTCCACGACTCACCCC
CACACAAAAGGAGGAAAGGTTTCCCTACACGAAAGAGGCGGGGCCGCTGGAAGTCTCCGTGA

Translation (393 aa):
MASATAAAAPGEAEETTRLRKPRFSFEENQILIREVRAHYPQLYGAQSRRVSVAERRRVWDSIATKINGI
TSWKRTGQEVQKRWNDFKRRTKEKLARVPHSTQGAGPAAEDAFSAEEETIFAILGPGVAGPGAGSGAEES
RAAASSQPQASTASTQRYVLSEDRRQDRRADTPAQSKGGSSSPESWARPSCNPQEAKERESTSPAAMQPV
QLPRLALSPPLPAPPPPPTALAQVAPSSPSPTPPRPTSAPEQSLDFLRAQQETANAIRELAGTLRQGLAK
LSEALSALLPLLPGTPADPLPPPPPPPPPPPPKPVLPPSAPKVELAPEPVSVVAAVVDGAVVAARGVIIS
PRSEEGVPKPLPPAPPLPLHDSPPHKRRKGFPTRKRRGRWKSP


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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