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Report for CCDS51935.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51935.1 Public Mus musculus 6 5530400C23Rik 23 108 98 CCDS HistoryNCBI Gene:232426Re-query CCDS DB by CCDS ID:51935.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51935.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048459.7 ENSMUSP00000035635.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048459.7Link to Ensembl Protein Viewer:ENSMUSP00000035635.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000048459Re-query CCDS DB by Protein ID:ENSMUSP00000035635
Original member Current member NCBI NM_027784.1 NP_082060.1 Accepted alive Link to Nucleotide Sequence:NM_027784.1Link to Protein Sequence:NP_082060.1Re-query CCDS DB by Nucleotide ID:NM_027784Re-query CCDS DB by Protein ID:NP_082060Link to BLAST:NP_082060.1

Chromosomal Locations for CCDS 51935.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 133292251 133292314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 133293157 133293198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 133294101 133294516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (522 nt):
ATGCTTGTGGTCCTGCTCACAGCAGCCTTGCTAGTCCTGAGCTCAGCTCAGAGGGCAGAGGAAGATTTGA
AC
AATGATAGTACATCTGGTGTCCAACCAATACCCAGCCCTGCAGAGAAAACCCAGGACTCAGAGTTAGG
T
CCTTCTGCTGCTGCTGCAAATATAGGGAATATCCAAGAATCATCACCATTAGTAAAAGTGGATCCTTCG
TCC
AACTCTGGGAATGAACAGCAAGTAGAACCGGAGGAATCACAACAGGCAGAGAGTCAAGAGCATTGTG
AC
TCCACTGGAAAACAAGAGAAAAATCAACCTAGAAAAAGAAATGTAGTGGAGGTTAAAAATCTTTCTTC
A
TCTCCTGAAAACTCACAAGGTTCACCCCAACAAATACAGTCAAAGCAGAAACCTTTGATTGAGGGAGGA
TCT
GGTCAAGAGAGAGTACCTCCTCCTCATCCTCTTAAATTGCTCCGACCACGAGTAGTTAATCATGATG
TA
TCTTTTTGGAGAGGGCCCCGGAGAAATTAG


Translation (173 aa):
MLVVLLTAALLVLSSAQRAEEDLNNDSTSGVQPIPSPAEKTQDSELGPSAAAANIGNIQESSPLVKVDPS
S
NSGNEQQVEPEESQQAESQEHCDSTGKQEKNQPRKRNVVEVKNLSSSPENSQGSPQQIQSKQKPLIEGG
S
GQERVPPPHPLKLLRPRVVNHDVSFWRGPRRN




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser