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Report for CCDS39361.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39361.1 Public Mus musculus 5 Ap5z1 23 108 98 CCDS HistoryNCBI Gene:231855Re-query CCDS DB by CCDS ID:39361.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39361.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038699.12 ENSMUSP00000041863.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038699.12Link to Ensembl Protein Viewer:ENSMUSP00000041863.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000038699Re-query CCDS DB by Protein ID:ENSMUSP00000041863
Original member Current member NCBI NM_172725.2 NP_766313.2 Accepted alive Link to Nucleotide Sequence:NM_172725.2Link to Protein Sequence:NP_766313.2Re-query CCDS DB by Nucleotide ID:NM_172725Re-query CCDS DB by Protein ID:NP_766313Link to BLAST:NP_766313.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766313.2 807 Q3U829 807 100% 0 0

Chromosomal Locations for CCDS 39361.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 142464095 142464135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142466258 142466392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142466490 142466676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142467642 142467786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142468021 142468130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142468864 142469032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142470007 142470147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142470290 142470327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142470394 142470556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142472203 142472384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142473908 142474050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142474374 142474514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142474875 142474986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142475703 142475800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142476694 142476826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142476897 142477111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142477216 142477486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2424 nt):
ATGTTCTCGGCGGGCGCGGAAAGTCTGCTGCACCAGGCCAGGGAAATCCAGGATGAGGAGCTACGGCGTT
TCTGCTCCCGGGTCACTAAGCTGCTGCAGGAAGCCCCAGGACCAGCCACCGTGGATGCCCTGCAGAGACT
CTTCCTCATCGTCTCAGCCACCAAGTACCCCCGTAGGCTGGAGAAGATGTGTGTGGACCTGTTACAGACC
ACTCTCTGCTTGCCTGCCAGCCCTGAGCAGCTCCAGGTCCTCTGTGCTGCTATCTTGAGAGAGATGTCAC
CTTTTAACGACCTGGCCCTGTCCTGTGATCACACCCCAAACACCCGGCAGCTTAGCCTTGTGGCCTCTGT
GCTCTTGGCCCAGGGAGACAGAAAAGGAGAGATCAGATGTGTGAGCCAGCGCATCTTCAAGATCCTCGAG
AACCGGCAGCCTGAGGGGCCCAGTGTCCGGCCCCTCCTCCCCATCCTGTCCAAGGTCATTGGCCTTGCCC
CGGGCATCCTCATGGAAGACCAGACCAACCTGCTCAGCAAAAGGCTGGTGGACTGGCTTCGCTACGCCAG
CATCCAGCAGGGGCTTCCGTACTCAGGGGGCTTCTTCTCCACACCCAGGACCCGGCAGCCCGGTCCCATC
ACTGAGGTGGATGGAGCAGTAGCTTCTGACTTCTTCACGGTACTCTCCACGGGCCAGCACTTCACAGAGG
ACCAGTGGGTGAACATGCAGGCCTTCTCCATGCTGAGGAAATGGCTGCTGCACAGTGGTCCCGAGGACCC
CTGCAGTCCTGATGCAGATGACAAGTCAGAGCTCGAGGGCTCCACCCTGTCTGTGCTGTCTGCGGCCTCC
ACTGCCAGCCGACTGCTGCCCCCTCGGGAGCGGCTGAGGGAGGTGGCCTTTGAGTACTGCCAGCGCCTGT
TGGAGCAGAGTAACCGGAGAGCGCTGAGGAAGGGGGACTCGGACCTACAGAAAGCTTGCCTGGTGGAAGC
TGTGTCGGTGTTGGATGTGCTGTGCCGGCAGGACCCCTCCTTCCTCTATCGCACCCTCTCCTGCCTGAAG
GCCCTGCACAGGAGGCTGGGCGAGGACCCTGGCAGCGAGCGGGCACTGGTGCCTCTTGCCCAGTTCTTCC
TGAACCATGGGGAAGCGGCCGCCATGGACGCAGAAGCCGTCTACGGGCAGCTGCTCCGAGGTCTCCCTTC
TGAACGCTTCCACAGCCCGACCCTGGCCTTTGAGGTCATACACTTCTGCACACACAACCTGGCTCTCTTC
GACTCCCACTTTCTCAGCCTTCTCAGGCTGAGCTTCCCAAGTCTGTTCAAGTTCCTGGCTTGGAACAGCC
CTCCTCTCACAGCGGAGTTTGTGGTCCTCCTCCCAGCTCTCGTGGATGCTGGCACCGCCGTGGAGATGCT
GCATGCGCTGCTTGACCTGCCCTGTCTGACTGCCGCCCTGGACCTTCAGCTCAGGTCCACACAGACTCCG
TCGGAAAGGCTGCTTTGGGATATCTCCCTCAGGGTCCCCAGCTGCCTGGAGGCCTTCCAGGACCCACAGT
TCCAAGGACTCTTCCGGCACCTGCTCCGTACCAAGGCCAGCGGTTCCACAGAGAGGCTGACGCCACTTCA
CCAGGTGCTGAAGCCCATGGCCAGCTGTGCCCGGGTAACCCAGTGTGCGGAGGCGGTGCCCGTCCTGCTT
CAGGCCTTCTTCTCAGCTGTGACCCAGACTGCCGATGGGGCCCTAATCAACCAGCTGGCACTGCTGCTCC
TGGAGAGAAGTGACTCCCTCTACCCGGTCCCTCAGTATGAGGCCCGTGTGCACGGGGTGCTGAGCTCCCA
GCTCCTGGTGCTGTGTAAGCTGAAGCCATCGCTGGTGGTGGAGCTTTCACGAGAGCTCCTGGAGTTCGTG
GGGAGCGTGAGCAGCATCCACAGCCGAGCCAGCGTGTTCACTTGTGTGGTGTGGGCCATTGGTGAGTACC
TGTCGGTGACTTGGGACAAGAGGTGCACAGCGGAACAGATCAACAAGTTCTTTGAAGCCCTGGAAGCCCT
GCTGTTTGAAGTCACCCAGTCCCGCCCCTTAGCCGACTTGCCCTGCTGTCCTCCAGAGGTGGTCACTGCA
CTCATGACCACACTGACCAAACTAGCCTCCCGGAGCCAAGACCTGATCCCAAGGGTGTCACTGTTCCTGT
CAAAAATGCGAACCCTGGCCCAGAACCCAGCCACCAGCTCTGTGCACAGTGAAGAGGGTGCGGAATCCAT
CCGGACCCGGGCCTCAGAGCTGCTAACCTTACTAAAGATGCCCAGTGTGGCCCAGTTTGTGTTCACACCT
CCTGCAGGCGTGTGCCAGCCCCGCTACCACCGGGACACCAACGTGGCCCTGCCTCTGGCTCTGCGCACGG
TCAGCCGGCTGGTGGAGAAGGAGGCTGGCCTCCTGCCAGGTTGA

Translation (807 aa):
MFSAGAESLLHQAREIQDEELRRFCSRVTKLLQEAPGPATVDALQRLFLIVSATKYPRRLEKMCVDLLQT
TLCLPASPEQLQVLCAAILREMSPFNDLALSCDHTPNTRQLSLVASVLLAQGDRKGEIRCVSQRIFKILE
NRQPEGPSVRPLLPILSKVIGLAPGILMEDQTNLLSKRLVDWLRYASIQQGLPYSGGFFSTPRTRQPGPI
TEVDGAVASDFFTVLSTGQHFTEDQWVNMQAFSMLRKWLLHSGPEDPCSPDADDKSELEGSTLSVLSAAS
TASRLLPPRERLREVAFEYCQRLLEQSNRRALRKGDSDLQKACLVEAVSVLDVLCRQDPSFLYRTLSCLK
ALHRRLGEDPGSERALVPLAQFFLNHGEAAAMDAEAVYGQLLRGLPSERFHSPTLAFEVIHFCTHNLALF
DSHFLSLLRLSFPSLFKFLAWNSPPLTAEFVVLLPALVDAGTAVEMLHALLDLPCLTAALDLQLRSTQTP
SERLLWDISLRVPSCLEAFQDPQFQGLFRHLLRTKASGSTERLTPLHQVLKPMASCARVTQCAEAVPVLL
QAFFSAVTQTADGALINQLALLLLERSDSLYPVPQYEARVHGVLSSQLLVLCKLKPSLVVELSRELLEFV
GSVSSIHSRASVFTCVVWAIGEYLSVTWDKRCTAEQINKFFEALEALLFEVTQSRPLADLPCCPPEVVTA
LMTTLTKLASRSQDLIPRVSLFLSKMRTLAQNPATSSVHSEEGAESIRTRASELLTLLKMPSVAQFVFTP
PAGVCQPRYHRDTNVALPLALRTVSRLVEKEAGLLPG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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