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Report for CCDS19461.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19461.1 Public Mus musculus 5 Tmem150c 23 108 98 CCDS HistoryNCBI Gene:231503Re-query CCDS DB by CCDS ID:19461.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19461.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063192.14 ENSMUSP00000057116.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063192.14Link to Ensembl Protein Viewer:ENSMUSP00000057116.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000063192Re-query CCDS DB by Protein ID:ENSMUSP00000057116
Original member NCBI NM_182841.1 NP_878261.1 Updated not alive Link to Nucleotide Sequence:NM_182841.1Link to Protein Sequence:NP_878261.1Re-query CCDS DB by Nucleotide ID:NM_182841Re-query CCDS DB by Protein ID:NP_878261
Current member NCBI NM_182841.2 NP_878261.1 Accepted alive Link to Nucleotide Sequence:NM_182841.2Link to Protein Sequence:NP_878261.1Re-query CCDS DB by Nucleotide ID:NM_182841Re-query CCDS DB by Protein ID:NP_878261Link to BLAST:NP_878261.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_878261.1 249 Q8C8S3-1 249 100% 0 0

Chromosomal Locations for CCDS 19461.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 100079853 100080061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 100083574 100083751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 100086127 100086254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 100092767 100092834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 100092935 100092967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 100093059 100093112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 100095607 100095686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (750 nt):
ATGGACGGGAAGAAATGCAGCGTGTGGATGTTTCTACCTCTCGTGTTTACTTTGTTTACTTCAGCTGGCT
TGTGGATAGTGTACTTTATAGCCGTGGAAGATGACAAAATTTTGCCATTAAATTCAGCTGCAAGGAAATC
GGGTGCGAAGCATGCTCCATACATCAGTTTTGCAGGTGACGACCCTCCTGCGAGCTGTGTGTTCAGTCAA
GTAATGAACATGGCCGCCTTCCTAGCCCTCGTGGTAGCTGTTCTGCGCTTCATCCAGCTAAAACCAAAGG
TTTTAAACCCATGGCTGAATATCAGCGGTCTGGCGGCGCTGTGTCTGGCTTCCTTTGGAATGACCTTACT
TGGTAATTTCCAGCTCACAAACGATGAAGAAATCCACAACGTGGGGACATCCCTGACCTTCGGGTTTGGC
ACTCTGACCTGCTGGATCCAGGCCGCACTGACACTCAAAGTCAATATCAAGAACGAGGGGCGGAGAGCTG
GGATCCCGAGAGTCATCTTGTCAGCTGTCATTACCCTCTGCGTAGTCCTGTATTTCATCCTGATGGCCCA
AGATATCCACATGTACGCAGCCAGGGTCCAGTGGGGCCTGGTCATGTGCTTCCTGGCGTACTTTGGCACC
CTGGCTGTGGAGTTCCGGCACTACCGCTATGAGATTGTGTGCTCCGAGTACCAAGAGAACTTCCTGAGCT
TCTCAGAAAGCCTGTCAGAAGCTTCTGAATATCAGACGGATCAGGTGTAG

Translation (249 aa):
MDGKKCSVWMFLPLVFTLFTSAGLWIVYFIAVEDDKILPLNSAARKSGAKHAPYISFAGDDPPASCVFSQ
VMNMAAFLALVVAVLRFIQLKPKVLNPWLNISGLAALCLASFGMTLLGNFQLTNDEEIHNVGTSLTFGFG
TLTCWIQAALTLKVNIKNEGRRAGIPRVILSAVITLCVVLYFILMAQDIHMYAARVQWGLVMCFLAYFGT
LAVEFRHYRYEIVCSEYQENFLSFSESLSEASEYQTDQV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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